Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 39 Aligned Residues 344 % Identity 23% Template c2rdxG_ PDB info PDB header:structural genomics, unknown function Chain: G: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, putative; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from roseovarius nubinhibens ism Resolution 2.00 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.										60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.
Query Sequence		V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	.	.	.	.	.	.	.	.	.	I	Y	Q	T	L	V	D	A	I	P	M	V	L	G	Q	E	V	A	R
Query Conservation																																																						.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.
Template Sequence		R	I	T	R	I	R	L	Y	K	T	D	L	P	Y	V	D	.	.	.	.	.	.	.	.	G	T	V	A	R	A	S	V	V	V	I	D	T	D	A	G	L	Q	G	C	G	E	F	T	P	C	G	E	N	Y	M	I	A	H	S	E	G	V	D	A	F	A	R	L	A	A	P	Q	L	L	G	Q	D	P	R	Q
Template Known Secondary structure															B	T	T	.	.	.	.	.	.	.	.														T	T									B		S	S	T	T	S	S	S			T	T														T	T	S		T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.									.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.														.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.														.	.	.	.	.	.	.	.
Template Sequence		V	A	R	M	E	R	L	M	D	H	L	V	Q	G	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	K	A	P	F	D	A	A	F	W	D	I	L	G	Q	A	T	G	Q	P	V	W	M	L	L	G	.	G	K	L	C	D	G	A	P	M	Y	R	V	A	.	.	.	.	.	.	.	.
Template Known Secondary structure													S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T		B					T	T	.			S		S	S			B					.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.														.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.																100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		T	D	L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	P	.	D	A	R	I	T	V	D	P	N	G
Query Conservation																																																																							.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.												.																		.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.												.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	R	S	E	A	E	T	R	A	E	L	A	R	H	R	A	A	.	G	Y	R	Q	F	Q	I	K	V	G	A	.	D	W	Q	S	D	I	D	R	I	R	A	C	L	P	L	L	E	P	G	E	K	A	M	A	D	A	N	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S															T	.	T										S	.													G	G	G	S		T	T								S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.												.
Template SS confidence
																							140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H	F	W
Query Conservation																																																																														.
Alig confidence																													.	.	.	.	.	.																																												.
Template Conservation																													.	.	.	.	.	.
Template Sequence		G	W	R	V	D	N	A	I	R	L	A	R	A	T	R	D	L	D	Y	I	L	E	Q	P	C	R	S	.	.	.	.	.	.	Y	E	E	C	Q	Q	V	R	R	V	A	D	Q	P	M	K	L	D	E	C	V	T	G	L	H	M	A	Q	R	I	V	A	D	R	G	A	E	I	C	C	L	K	I	S	N	L	G
Template Known Secondary structure			S												T	T	T									S	S	S	.	.	.	.	.	.									T	T			S						T	T			S											T			S						T	T	T	T	T
Template Predicted Secondary structure																													.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.							.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P	D	A	P	G
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		G	L	S	K	A	R	R	T	R	D	F	L	I	D	N	R	M	P	V	V	A	E	D	S	W	G	G	E	I	A	S	A	A	V	A	H	F	A	A	S	T	P	E	E	F	L	.	I	N	S	T	D	L	M	N	Y	N	T	R	S	T	G	L	G	G	P	T	V	H	Q	G	R	L	Y	A	S	D	T	P	G
Template Known Secondary structure		S														T	T								S	B		S													T	S		G	G	G	B	.			B			G	G	G	G	B	S	S		S									T	T							S	S	B
Template Predicted Secondary structure																																																.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	V	E	L	D	W	E	Q	V	Q	K	A	H	E	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	V	T	P	D	F	N	S	L	G	A	P	V	A	D	W
Template Known Secondary structure		T	S										S		S
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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