Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 30 Aligned Residues 363 % Identity 23% Template c2qq6B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme- PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme-like protein from rubrobacter3 xylanophilus dsm 9941 Resolution 2.90 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		S	S	P	V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	.	.	.	D	V	I	Y	Q	T	L	V	D	A	I	P	M	V	L	G	Q	E	V	A	R	L	N	K
Query Conservation																																																							.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.										.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		S	A	P	R	I	T	R	V	E	T	A	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	V	G	P	S	V	L	V	R	V	W	A	G	D	E	.	H	G	L	G	E	C	Y	P	S	A	P	A	A	G	I	H	H	I	V	X	N	X	E	E	Q	L	L	G	E	D	P	R	D	V	E	R
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S										T	T		.										S												T	G	G	G	T	T	T			T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.															.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K	T	D	L
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.																														.
Template Conservation																				.	.	.	.	.	.	.	.																														.
Template Sequence		L	Y	E	K	X	R	R	W	N	I	F	T	G	G	Q	A	G	A	.	.	.	.	.	.	.	.	V	I	T	A	L	S	G	I	E	T	A	L	W	D	L	A	G	K	L	Q	G	V	P	V	Y	R	L	L	G	.	G	A	F	R	R	R	V	R	L	Y	A	D	C	N	A	G	T	V	D	A	A	A	H	H
Template Known Secondary structure										T	T	T	T	T	T	T	S	S		.	.	.	.	.	.	.	.																					T	S		G	G	G	T	T	T	.			S		S								T	T	G	G	G			T	T	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.																														.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.									.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.																	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.																		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		I	E	G	G	L	F	E	.	.	.	.	.	.	.	.	.	.	.	.	E	G	S	N	E	E	Y	I	A	V	A	R	E	A	V	E	R	.	G	F	D	A	I	K	L	D	V	D	D	I	T	G	P	L	H	R	D	F	W	N	G	A	I	S	P	R	E	H	E	A	X	V	A	R	V	A	A	V	R	E	A
Template Known Secondary structure			T	T		S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	S	S															T	.	T		S									T	T	S	T	T		S		S	S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		138	.	140	.	.	.	.													.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		226		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure			.																													.
Query SS confidence			.																													.
Query Sequence		F	.	P	D	A	R	I	T	V	D	P	N	G	A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L
Query Conservation			.																													.
Alig confidence			.																													.													.	.	.	.
Template Conservation																																													.	.	.	.
Template Sequence		V	G	P	E	V	E	V	A	I	D	X	H	G	R	F	D	I	P	S	S	I	R	F	A	R	A	X	E	P	F	G	L	L	W	L	E	E	P	T	P	P	E	N	.	.	.	.	L	D	A	L	A	E	V	R	R	S	T	S	T	P	I	C	A	G	E	N	V	Y	T	R	F	D	F	R	E	L	F	A	K
Template Known Secondary structure				S	S	S							T	T															G	G	G	T		S						S		S	S		.	.	.	.									T	T		S	S						T	T
Template Predicted Secondary structure																																													.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.					.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		304	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.
Predicted Secondary structure												.																																																																	.
Query SS confidence												.																																																																	.
Query Sequence		N	A	V	D	I	P	L	A	D	P	.	H	F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	.	T	Q	N	P
Query Conservation												.																																																																	.
Alig confidence												.																										.																																							.
Template Conservation																																						.
Template Sequence		R	A	V	D	Y	V	X	P	D	V	A	K	C	G	G	L	A	E	A	K	R	I	A	N	L	A	E	L	D	Y	I	P	F	A	P	H	.	N	V	S	S	P	V	G	T	V	A	A	A	H	V	C	A	A	V	S	N	F	A	V	L	E	W	H	A	I	D	X	P	H	W	E	D	F	V	R	Y	P	G	G
Template Known Secondary structure		T			S										T															T	T			B				.																	S		T	T	B								T	T		T	T	S	G	G	G				S	S	S
Template Predicted Secondary structure																																						.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	I	K	N	G	K	I	A	V	P	D	A	P	G	L	G	V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	I	R	E	G	H	I	E	L	T	E	E	P	G	L	G	L	E	L	D	E	E	A	A	F	E	H
Template Known Secondary structure			S	B		S	S								S	G	G	G											T
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions