Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 27 Aligned Residues 341 % Identity 23% Template c2qjjC_ PDB info PDB header:lyase Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of d-mannonate dehydratase from novosphingobium2 aromaticivorans Resolution 1.80 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																													.	.	.	.
Query SS confidence																																																													.	.	.	.
Query Sequence		V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	Y	Q	T	L	V	D	.	.	.	.	A	I	P	M	V	L	G	Q	E	V	A	R	L	N	K	V	V
Query Conservation																																																													.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	T	A	A	R	V	I	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	P	G	R	N	F	V	T	L	K	I	E	T	D	Q	G	V	Y	G	I	G	D	A	T	L	N	G	R	E	L	S	V	V	A	Y	L	Q	E	H	V	A	P	C	L	I	G	M	D	P	R	R	I	E	D	I	W
Template Known Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S										T	T	S										T	T												T						T	T	S		T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.															.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K	T	D	L	P	Y
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.																												.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.																												.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	Y	V	Y	R	G	A	Y	W	R	R	G	P	V	T	M	.	.	.	.	.	.	.	.	.	.	R	A	I	A	A	V	D	M	A	L	W	D	I	K	A	K	M	A	G	M	P	L	Y	Q	L	L	G	.	G	R	S	R	D	G	I	M	V	Y	G	H	A	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	S	S								.	.	.	.	.	.	.	.	.	.																			T	S	B						T	.			S		S	S								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.																												.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.											.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210															.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	.	P	D
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	S	D	I	A	E	T	V	E	A	V	G	H	Y	I	D	M	.	G	Y	K	A	I	R	A	Q	T	G	V	P	G	I	S	L	P	S	V	T	G	W	D	T	R	K	A	L	N	Y	V	P	K	L	F	E	E	L	R	K	T	Y	G	F	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S														T	.	T		S									T	T																T	T														S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
																		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		A	R	I	T	V	D	P	N	G	A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D
Query Conservation																												.
Alig confidence																												.													.	.	.	.
Template Conservation																																									.	.	.	.
Template Sequence		H	H	L	L	H	D	G	H	H	R	Y	T	P	Q	E	A	A	N	L	G	K	M	L	E	P	Y	Q	L	F	W	L	E	D	C	T	P	A	E	N	.	.	.	.	Q	E	A	F	R	L	V	R	Q	H	T	V	T	P	L	A	V	G	E	I	F	N	T	I	W	D	A	K	D	L	I	Q	N	Q	L	I	D
Template Known Secondary structure		S							T	T		S													G	G	G			S				S		S			S	S	.	.	.	.	G	G	G	G									S						T	T			S	G	G	G	T						T	T			S
Template Predicted Secondary structure																																									.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.					.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		308	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure								.																													.
Query SS confidence								.																													.
Query Sequence		I	P	L	A	D	P	.	H	F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	.	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K
Query Conservation								.																													.
Alig confidence								.																													.																								.	.
Template Conservation																																																													.	.
Template Sequence		Y	I	R	A	T	V	V	G	A	G	G	L	T	H	L	R	R	I	A	D	L	A	S	L	Y	Q	V	R	T	G	C	H	G	A	T	D	L	S	P	V	T	M	G	C	A	L	H	F	D	T	W	V	P	N	F	G	I	Q	E	.	.	Y	M	R	H	T	E	E	T	D	A	V	F	P	H	D	Y	W	F	E
Template Known Secondary structure							T	T	T	T	T															T	T									T	T	S																T	T	B					.	.												S		B	S
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	K	I	A	V	P	D	A	P	G	L	G	V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	E	L	F	V	G	E	T	P	G	H	G	V	D	I	D	E	E	L	A	A	K	Y
Template Known Secondary structure		T	T								S	B	S	S	B								T	T	S
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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