Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 34 Aligned Residues 340 % Identity 28% Template c2qdeA_ PDB info PDB header:lyase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family PDBTitle: crystal structure of mandelate racemase/muconate lactonizing family2 protein from azoarcus sp. ebn1 Resolution 1.93 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.							.	.	.	.	.	60	.	.	.	.	.	.	.	.	.						70	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.																.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.																.	.	.	.	.
Query Sequence		V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	.	.	.	.	.	.	P	G	G	D	V	I	Y	Q	T	L	V	D	A	I	P	.	.	.	.	.	M	V	L	G	Q	E	V
Query Conservation																																																	.	.	.	.	.	.																.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.																.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	T	K	V	E	V	I	P	I	S	T	P	M	K	.	.	.	.	.	.	.	.	.	.	.	R	I	D	G	V	L	L	K	L	H	S	D	E	G	L	V	G	I	A	D	A	G	D	T	S	S	W	Y	R	G	E	T	Q	D	S	I	T	S	M	I	C	D	F	F	A	P	K	V	L	L	G	E	D	P
Template Known Secondary structure																	.	.	.	.	.	.	.	.	.	.	.												T	T	S												T	T	T	T														T					T	T	T	T			T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.												.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	L	N	K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.														.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.														.	.	.	.	.	.
Template Sequence		T	K	I	E	K	I	V	G	R	M	D	I	L	T	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	N	Q	A	K	A	T	V	D	F	A	L	H	D	L	V	G	K	R	F	G	V	P	V	Y	Q	L	L	G	.	G	K	T	I	E	R	I	P	L	G	L	V	L	.	.	.	.	.	.
Template Known Secondary structure		T														S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					T	S	B					T	T	.			S		S	S			B					.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.														.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.																100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		T	K	T	D	L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	P	.	D	A	R	I	T	V	D	P
Query Conservation																																																																									.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.												.																		.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.												.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	G	E	P	E	A	V	A	E	E	A	L	A	V	L	R	E	.	G	F	H	F	V	K	L	K	A	G	G	.	P	L	K	A	D	I	A	M	V	A	E	V	R	R	A	V	G	D	D	V	D	L	F	I	D	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S																.	T		S								S	.																		T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.												.
Template SS confidence
																									142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																					.																																																												.
Query SS confidence																					.																																																												.
Query Sequence		N	G	A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.
Query Conservation																					.																																																												.
Alig confidence																					.													.	.	.	.																																												.
Template Conservation																																		.	.	.	.
Template Sequence		N	G	A	W	T	Y	D	Q	A	L	T	T	I	R	A	L	E	K	Y	N	L	S	K	I	E	Q	P	L	P	A	W	D	.	.	.	.	L	D	G	M	A	R	L	R	G	K	V	A	T	P	I	Y	A	D	E	S	A	Q	E	L	H	D	L	L	A	I	I	N	K	G	A	A	D	G	L	M	I	K	T	Q
Template Known Secondary structure		T	T															G	G	G			S						S		T	T		.	.	.	.									T	T		S	S					S	T	T			S											T			S
Template Predicted Secondary structure																																		.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.					.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.										.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.
Query Sequence		H	F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	.	.	.	.	.	.	.	.	.	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I
Query Conservation																																																					.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	G	G	L	L	K	A	Q	R	W	L	T	L	A	R	L	A	N	L	P	V	I	C	G	C	M	V	G	S	G	L	E	A	S	P	A	A	H	L	L	A	A	N	D	W	I	A	Q	F	P	Q	E	N	A	G	P	L	H	I	H	D	C	L	N	S	R	D	I	D	N	D	I	A	L	N	V	P	R	F
Template Known Secondary structure				T	S															T									S																	T	T	G	G	G	S		B									T	T		S	S	G	G	G					S	B	T	T
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	G	K	I	A	V	P	D	A	P	G	L	G	V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	G	Y	L	Y	P	N	D	G	P	G	L	G	I	E	L	N	E	D	L	V	R	R	L
Template Known Secondary structure			T	T							S	S	B	T				B
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions