Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 25 Aligned Residues 357 % Identity 19% Template c2qddA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of a member of enolase superfamily from roseovarius2 nubinhibens ism Resolution 2.30 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60										.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.
Query Sequence		S	P	V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	.	.	.	.	.	.	.	.	.	Y	Q	T	L	V	D	A	I	P	M	V	L	G	Q	E	V
Query Conservation																																																									.	.	.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	R	I	T	R	L	T	V	F	H	L	D	L	P	L	A	K	P	Y	W	L	S	G	L	K	F	D	R	L	D	S	T	Y	L	R	I	D	T	D	E	G	V	T	G	W	G	E	G	C	P	W	G	H	S	Y	L	P	A	H	G	P	G	L	R	A	G	I	A	T	L	A	P	H	L	L	G	L	D	P
Template Known Secondary structure																																									T	T	S										S	T	T	T	S	S	S																		T	T			T
Template Predicted Secondary structure
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	L	N	K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.														.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.														.	.	.	.	.	.
Template Sequence		R	S	L	D	H	V	N	R	V	M	D	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	G	H	S	Y	V	K	S	P	I	D	M	A	C	W	D	I	L	G	Q	V	A	G	L	P	L	W	Q	L	L	G	.	G	E	A	A	T	P	V	P	I	N	S	S	I	.	.	.	.	.	.
Template Known Secondary structure		T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S																					T		B					T	T	.		S	S						B					.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.														.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.																.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		T	K	T	D	L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	P	.	D	A	R	I	T	V	D	P
Query Conservation																																																																									.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																														.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	G	T	P	D	Q	M	L	G	L	I	A	E	A	A	A	Q	.	G	Y	R	T	H	S	A	K	I	G	G	S	D	P	A	Q	D	I	A	R	I	E	A	I	S	A	G	L	P	D	G	H	R	V	T	F	D	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S																	.	T										S	S															S			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
																									140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		N	G	A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H
Query Conservation																																																																																.
Alig confidence																						.										.	.	.	.	.	.																																											.
Template Conservation																						.										.	.	.	.	.	.
Template Sequence		N	R	A	W	T	P	A	I	A	V	E	V	L	N	S	V	R	A	R	D	.	W	I	E	Q	P	C	Q	T	L	.	.	.	.	.	.	D	Q	C	A	H	V	A	R	R	V	A	N	P	I	M	L	D	E	C	L	H	E	F	S	D	H	L	A	A	W	S	R	G	A	C	E	G	V	K	I	K	P	N	R
Template Known Secondary structure		T	T												T	S						.						S	S	S		.	.	.	.	.	.								T	T			S						T	T			S											T			S
Template Predicted Secondary structure																						.										.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.							.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	G	L	T	R	A	R	Q	I	R	D	F	G	V	S	V	G	W	Q	M	H	I	E	D	V	G	G	T	A	L	A	D	T	A	A	L	H	L	A	A	S	T	P	E	A	N	R	L	A	S	W	L	G	H	A	H	L	A	D	D	P	I	P	G	Q	G	A	R	N	R	D	G	L	A	T	P	P	S	A
Template Known Secondary structure			T	S															T								S	S															T	S		T	T	T	B			B			G	G	G	G	B	S			S	S	T	T		S				B	T	T							S
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	G	V	E	L	D	W	E	Q	V	Q	K	A	H	E	A	Y	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	L	G	V	I	P	D	P	E	A	L	G	R	P	V	A	S	Y	D	E
Template Known Secondary structure		S	B	T						G	G	G	S		S		S
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions