Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 55 Aligned Residues 359 % Identity 24% Template c2ppgB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:putative isomerase; PDBTitle: crystal structure of putative isomerase from sinorhizobium meliloti Resolution 2.49 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.							.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.																														.	.	.	.
Query SS confidence																																		.	.	.	.	.	.																														.	.	.	.
Query Sequence		S	P	V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	.	.	.	.	.	.	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	Y	Q	T	L	V	D	.	.	.	.	A	I	P	M	V	L	G	Q	E
Query Conservation																																		.	.	.	.	.	.																														.	.	.	.
Alig confidence																																		.	.	.	.	.	.																														.	.	.	.
Template Conservation
Template Sequence		S	D	R	V	K	K	I	E	S	F	T	L	T	L	P	R	P	N	G	R	G	Y	L	V	R	K	A	N	R	T	V	Y	P	T	F	D	R	S	V	L	V	R	I	E	T	E	N	G	A	V	G	W	G	E	T	Y	G	L	V	A	P	R	A	T	X	E	I	I	D	D	L	L	A	D	F	T	I	G	R	D
Template Known Secondary structure																				T	T	S					T	T	T	T					S												T	T											S	S												T	T	G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	R	L	N	K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.																														.																		.
Template Conservation																										.	.	.	.	.	.	.	.																														.																		.
Template Sequence		P	F	D	A	A	A	I	H	D	D	L	Y	D	L	X	R	V	R	G	Y	T	G	G	F	.	.	.	.	.	.	.	.	Y	V	D	A	L	A	A	I	D	I	A	L	W	D	L	A	G	K	L	A	G	L	P	V	C	K	L	L	G	.	G	Q	R	R	D	R	I	A	A	Y	I	S	G	L	P	E	D	.
Template Known Secondary structure		G	G	G											T	T	G	G	G	T		S	S			.	.	.	.	.	.	.	.																					T	S	B	G	G	G	G	T	T	.					S												S	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.																														.																		.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.									.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	K	T	D	L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	P	D	A	R	I	T	V	D	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.	.	.										.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.	.	.										.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	A	K	R	A	E	L	A	A	A	W	Q	A	K	.	G	F	S	S	F	K	F	A	S	P	V	.	.	.	A	K	E	X	E	I	L	R	E	.	.	R	L	G	P	A	V	R	I	A	C	D	X
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S													T	T	.	T											.	.	.										.	.				S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.	.	.										.	.
Template SS confidence
																													165	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		N	G	A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	H
Query Conservation																					.
Alig confidence																					.													.	.	.	.
Template Conservation																																		.	.	.	.
Template Sequence		H	W	A	H	T	A	S	E	A	V	A	L	I	K	A	X	E	P	H	G	L	W	F	A	E	A	P	V	R	T	E	D	.	.	.	.	I	D	G	L	A	R	V	A	A	S	V	S	T	A	I	A	V	G	E	E	W	R	T	V	H	D	X	V	P	R	V	A	R	R	A	L	A	I	V	Q	P	E	X	G
Template Known Secondary structure			S															G	G	G									S		T	T		.	.	.	.									T	T		S	S						T	T			S	G	G	G	T						T	T			S
Template Predicted Secondary structure																																		.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P	D	A
Query Conservation
Alig confidence																																																		.
Template Conservation																																																		.
Template Sequence		H	K	G	I	T	Q	F	X	R	I	G	A	Y	A	H	V	H	H	I	K	V	I	P	H	A	T	I	G	A	G	I	F	L	A	A	S	L	Q	A	S	A	A	L	A	N	V	D	C	.	H	E	F	Q	H	S	I	F	E	P	N	R	R	L	L	V	G	D	X	D	C	L	N	G	E	Y	V	V	P	T	G
Template Known Secondary structure																		T	T									S	S		S														T	T	B			.									T	G	G	G	G	G				S					T	T							S
Template Predicted Secondary structure																																																		.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	G	V	E	L	D	W	E	Q	V	Q	K	A	H	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	L	G	V	E	P	S	K	E	A	Q	G	L	L	K	K	H
Template Known Secondary structure		S	B	T	S
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions