Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 90 Aligned Residues 325 % Identity 21% Template c2pgeA_ PDB info PDB header:lyase Chain: A: PDB Molecule:menc; PDBTitle: crystal structure of menc from desulfotalea psychrophila2 lsv54 Resolution 1.60 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.									.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.
Query Sequence		M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	.	.	.	.	.	.	.	.	D	V	I	Y	Q	T	L	V	D	A	I	P	M	V	L	G	Q	E	V	A	R	L	N	K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D
Query Conservation																																					.	.	.	.	.	.	.	.
Alig confidence																.						.															.	.	.	.	.	.	.	.
Template Conservation																.						.
Template Sequence		S	D	L	I	F	K	R	V	L	T	S	K	P	T	.	W	F	V	R	L	.	D	I	D	G	H	G	G	Q	G	E	V	S	L	I	P	G	L	S	L	D	P	E	E	Q	I	G	R	E	L	D	L	L	A	R	R	L	R	A	E	E	P	I	R	L	R	Q	F	L	A	E	R	G	G	A	D	F	S	D	Y
Template Known Secondary structure						B										.						.			T	T											T	T	T		S	S																			S												T	S	S		T	T	S
Template Predicted Secondary structure																.						.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.									.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.
Query Sequence		F	D	T	F	G	K	G	A	.	.	.	.	.	.	.	.	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K	T	D	L	P	Y	V	E	N
Query Conservation										.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																																			.			.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.			.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	S	V	L	T	D	I	A	G	I	L	D	S	W	Q	V	S	T	D	G	R	F	P	A	L	R	F	A	L	E	M	A	L	L	D	L	L	S	G	G	R	Q	E	W	F	A	S	D	F	T	.	R	G	.	E	K	R	I	P	V	N	G	L	I	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															T	T	S	S	T	T	S	S																		T	S	S	S		S	S		S	T	T	T	.	T	T	.	S					B						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.			.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.		.	150	.	.	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	P	.	.	D	A	R	I	T	V	D	P	N	G	A	W	L	L	D	E	A
Query Conservation																																																															.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.										.	.	.																		.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.										.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	E	A	A	F	M	Q	E	Q	I	E	A	K	L	A	E	.	G	Y	G	C	L	K	L	K	I	.	.	.	D	F	D	K	E	C	A	L	L	A	G	I	R	E	S	F	S	P	Q	Q	L	E	I	R	V	D	A	N	G	A	F	S	P	A	N	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T	.	T		S							.	.	.																S		T	T	T								T	T	B	B		T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.										.	.	.
Template SS confidence
																160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		245	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320
Predicted Secondary structure												.																																															.	.														.
Query SS confidence												.																																															.	.														.
Query Sequence		I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	.	.	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H	F	W	T	L	S	G
Query Conservation												.																																															.	.														.
Alig confidence												.													.	.	.	.																															.	.														.
Template Conservation																									.	.	.	.
Template Sequence		P	Q	R	L	K	R	L	S	Q	F	H	L	H	S	I	E	Q	P	I	R	Q	H	Q	.	.	.	.	W	S	E	M	A	A	L	C	A	N	S	P	L	A	I	A	L	D	E	E	L	I	G	L	G	A	E	Q	R	S	A	M	L	D	A	I	R	P	Q	Y	I	I	L	K	P	S	L	L	G	G	F	H	Y
Template Known Secondary structure										T	T			S						B		S	S		.	.	.	.												S	S					S	G	G	G	T	T			T													S										T	S
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.					.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V
Query Conservation
Alig confidence																																																								.	.	.
Template Conservation																																																								.	.	.
Template Sequence		A	G	Q	W	I	E	L	A	R	E	R	G	I	G	F	W	I	T	S	A	L	E	S	N	L	G	L	A	A	I	A	Q	W	T	A	L	Y	Q	P	T	M	P	Q	G	L	G	T	G	Q	L	Y	T	N	N	.	.	.	L	P	S	N	L	A	V	D	G	G	L	L	G	V
Template Known Secondary structure												T	T						B			S															T	T			S	S		B	B		S					B	S	S		.	.	.									S	S
Template Predicted Secondary structure																																																								.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions