Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 52 Aligned Residues 358 % Identity 18% Template c2oz3F_ PDB info PDB header:lyase Chain: F: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of l-rhamnonate dehydratase from azotobacter2 vinelandii Resolution 2.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.															.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																														.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																														.
Query Sequence		S	S	P	V	I	T	D	M	K	V	I	P	V	A	G	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	.	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	Y	Q	T	L	V	D	.	A	I
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																														.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																														.
Template Conservation
Template Sequence		S	I	P	T	I	K	Q	V	R	A	F	V	L	R	G	D	G	H	W	I	D	D	H	I	S	T	P	X	G	K	Y	P	E	Y	R	Q	S	R	R	S	F	G	I	N	V	L	G	T	L	V	V	E	I	E	A	S	D	G	N	V	G	F	A	V	T	T	G	G	E	P	A	A	Y	I	V	E	K	H	L	A
Template Known Secondary structure					B													S		G	G	G	S	S				G	G	G	G	S	G	G	G	S	S						T	T	T	S	S										T	T	S																				T	G	G
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	V	L	G	Q	E	V	A	R	L	N	K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.																													.
Template Conservation																																	.	.	.	.	.	.	.	.	.																													.
Template Sequence		R	F	L	E	G	A	R	V	T	D	I	E	R	I	W	D	Q	X	Y	N	S	T	L	Y	Y	G	R	K	G	L	V	.	.	.	.	.	.	.	.	.	I	N	T	I	S	G	V	D	L	A	L	W	D	L	L	G	K	V	R	R	E	P	V	H	Q	L	L	G	.	G	A	V	R	D	E	L	Q	F	Y	A
Template Known Secondary structure		G	G	T	T	T	S	B	T	T														G	G	G		S	S	T			.	.	.	.	.	.	.	.	.																				T	S	B					T	T	.			S	S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.																													.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.										.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		Y	L	F	Y	I	G	D	R	T	K	T	D	L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	.	P
Query Conservation																																																																																.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.																	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.
Template Sequence		T	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	D	L	A	Q	K	X	G	F	I	G	G	K	X	.	P	L	H	H	G	P	S	E	G	E	E	.	G	L	K	K	N	L	E	E	L	A	T	X	R	E	R	V	G	P
Template Known Secondary structure			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T		S					.						G	G	G				.																		S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.
Template SS confidence
		161	.	.																																.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																													.																															.	.
Query SS confidence																													.																															.	.
Query Sequence		D	A	R	I	T	V	D	P	N	G	A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	.	.	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N
Query Conservation																													.																															.	.
Alig confidence																													.													.	.	.	.															.	.
Template Conservation																																										.	.	.	.
Template Sequence		D	F	W	L	X	F	D	C	W	X	S	L	D	L	N	Y	A	T	R	L	A	R	G	A	R	E	Y	G	L	K	W	I	E	E	A	L	P	P	D	D	.	.	.	.	Y	W	G	Y	A	E	L	R	R	N	A	P	T	G	X	X	V	T	T	G	E	H	E	A	T	R	W	G	F	R	X	L	L	E	X	G
Template Known Secondary structure		S	S							T	T															G	G	G	T								S		T	T		.	.	.	.											S		T	T							T	T													T	T
Template Predicted Secondary structure																																										.	.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.					.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		305	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		A	V	D	I	P	L	A	D	P	.	H	F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		C	C	D	I	I	Q	P	D	V	G	W	C	G	G	V	T	E	L	L	K	I	S	A	L	A	D	A	H	N	A	L	V	V	P	H	G	S	S	V	Y	S	Y	H	F	V	A	T	R	Q	N	S	P	F	A	E	F	L	X	X	A	P	K	A	D	Q	V	V	P	X	F	H	P	Q	L	L	G	E	P	V	P
Template Known Secondary structure				S						T	T	T	S	S															T	T									T								T	T		T	T			S							S	T	T	S		S				T	T	T	T	T			T
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		384	.	.	.		.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		I	K	N	G	.	K	I	A	V	P	D	A	P	G	L	G	V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		E	N	G	R	X	R	L	S	R	L	D	Q	P	G	F	G	V	T	L	N	P	E	C	Q	L	H	R
Template Known Secondary structure		B	T	T				G	G	G			S	S	B	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions