Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 31 Aligned Residues 364 % Identity 26% Template c2oqhD_ PDB info PDB header:isomerase Chain: D: PDB Molecule:putative isomerase; PDBTitle: crystal structure of an isomerase from streptomyces coelicolor a3(2) Resolution 1.98 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	Y	Q	T	L	V	D	A	I	P	M	V	L	G	Q	E	V	A	R	L	N	K	V	V	Q	Q	V	H
Query Conservation
Alig confidence																									.	.	.	.
Template Conservation																									.	.	.	.
Template Sequence		K	I	T	D	V	D	V	W	V	V	N	L	P	L	V	N	P	F	E	T	K	T	G	.	.	.	.	E	T	R	T	V	V	R	V	R	T	D	S	G	V	E	G	W	G	E	T	X	W	G	A	P	V	A	A	I	V	R	R	X	A	P	D	L	I	G	T	S	P	F	A	L	E	A	F	H	R	K	Q	H
Template Known Secondary structure															B										.	.	.	.											T	T	S										S															T	T	S		T	T									T	T
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K	T	D	L	P	Y	V	E	N	T
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.																											.																											.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.																											.																											.	.	.	.
Template Sequence		X	V	P	F	F	Y	G	Y	L	G	Y	A	.	.	.	.	.	.	.	.	.	.	.	A	I	A	A	V	D	V	A	C	W	D	A	X	G	K	A	T	G	Q	S	V	T	D	L	L	G	.	G	A	V	R	D	E	V	P	I	T	A	L	I	T	R	A	D	A	P	G	A	T	P	A	D	L	.	.	.	.
Template Known Secondary structure		T												.	.	.	.	.	.	.	.	.	.	.																		T		B	T	T	G	G	G	T	.			S		S										G	G	G	S	T	T			G	G	G		.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.																											.																											.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.												.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	P	D	A	R	I	T	V	D	P	N	G	A	W	L	L	D	E	A	I	S	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	A	X	A	E	H	A	V	R	V	V	E	E	G	.	G	F	D	A	V	K	L	K	G	T	T	.	D	C	A	G	D	V	A	I	L	R	A	V	R	E	A	L	P	G	V	N	L	R	V	D	P	N	A	A	W	S	V	P	D	S	V	R	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.			S								S	.																	T	T	S							T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.												.
Template SS confidence
																	148	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		248	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure									.																																																												.
Query SS confidence									.																																																												.
Query Sequence		C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H	F	W	T	L	S	G	A	V	R	V	A
Query Conservation									.																																																												.
Alig confidence									.											.	.	.	.	.	.																																												.
Template Conservation																				.	.	.	.	.	.
Template Sequence		G	I	A	L	E	E	L	D	L	E	Y	L	E	D	P	C	V	G	.	.	.	.	.	.	I	E	G	X	A	Q	V	K	A	K	V	R	I	P	L	C	T	N	X	C	V	V	R	F	E	D	F	A	P	A	X	R	L	N	A	V	D	V	I	H	G	D	V	Y	K	W	G	G	I	A	A	T	K	A	L	A
Template Known Secondary structure						G	G	G			S						S	S		.	.	.	.	.	.													S					S	S	S			S										T	T			S										T	S
Template Predicted Secondary structure																				.	.	.	.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.							.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P	D	A	P	G	L	G	V	E	L	D	W	E	Q
Query Conservation
Alig confidence																																																	.	.	.
Template Conservation																																																	.	.	.
Template Sequence		A	H	C	E	T	F	G	L	G	X	N	L	H	S	G	G	E	L	G	I	A	T	A	A	H	L	A	V	V	S	S	T	P	V	L	S	R	A	I	D	S	X	Y	Y	L	H	A	.	.	.	D	D	I	I	E	P	L	H	L	E	N	G	R	L	R	V	P	S	G	P	G	L	G	V	S	V	D	E	D	K
Template Known Secondary structure							T	T								S	S															T		T	T			S						G	G	G	B		.	.	.	S		S	B							T	T							S	S	B	T	S			B
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.				.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		406	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	K	A	H	E	A	Y	K	R	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	H	Y	A	G	V	N	E	R	D	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions