Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 49 Aligned Residues 353 % Identity 22% Template c2gdqB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:yitf; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from bacillus subtilis at 1.8 a resolution Resolution 1.80 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	.	.	I	Y	Q	T	L	V	D	A	I	P	M	V	L	G	Q	E	V	A	R	L	N	K	V	V	Q	Q
Query Conservation																																																						.	.
Alig confidence																																																						.	.
Template Conservation
Template Sequence		K	I	V	R	I	E	T	F	P	L	F	H	R	L	E	K	P	Y	G	D	A	N	G	F	K	R	Y	R	T	C	Y	L	I	R	I	I	T	E	S	G	I	D	G	W	G	E	C	V	D	W	L	P	A	L	H	V	G	F	T	K	R	I	I	P	F	L	L	G	K	Q	A	G	S	R	L	S	L	V	R	T
Template Known Secondary structure		B																				T	T																T	T	S									S												T						T	T	S	B	T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K	T	D	L	P	Y	V	E
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																			.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																			.	.	.	.	.	.	.	.	.	.
Template Sequence		I	Q	K	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Q	R	A	A	S	A	V	S	M	A	L	T	E	I	A	A	K	A	A	D	C	S	V	C	E	L	W	G	.	G	R	Y	R	E	E	I	P	V	Y	A	S	F	Q	S	Y	S	D	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				T	T	S	B					T	T	.			S		S										B		B	S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.																			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	.	R	F	P	D	A	R	I	T	V	D	P	N	G	A	W	L	L	D	E	A
Query Conservation																																																													.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																											.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	Q	W	I	S	R	S	V	S	N	V	E	A	Q	L	K	K	.	G	F	E	Q	I	K	V	K	I	G	G	T	S	F	K	E	D	V	R	H	I	N	A	L	Q	H	T	A	G	S	S	I	T	M	I	L	D	A	N	Q	S	Y	D	A	A	A	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T															T	.	T									S	S	S																		T	T	S							T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
																136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		245	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.
Predicted Secondary structure												.	.																																																												.
Query SS confidence												.	.																																																												.
Query Sequence		I	S	L	C	K	G	L	N	D	V	.	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H	F	W	T	L	S	G	A
Query Conservation												.	.																																																												.
Alig confidence												.	.													.	.	.	.																																												.
Template Conservation																										.	.	.	.
Template Sequence		F	K	W	E	R	Y	F	S	E	W	T	N	I	G	W	L	E	E	P	L	P	F	D	Q	.	.	.	.	P	Q	D	Y	A	M	L	R	S	R	L	S	V	P	V	A	G	G	E	N	M	K	G	P	A	Q	Y	V	P	L	L	S	Q	R	C	L	D	I	I	Q	P	D	V	M	H	V	N	G	I	D	E	F
Template Known Secondary structure			T	T					T	T		S									S		S	S		.	.	.	.									T	T		S	S						T	T			S										T	T			S						T	T	T	T	T	S
Template Predicted Secondary structure																										.	.	.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.					.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.
Query SS confidence																																																									.	.	.	.
Query Sequence		V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	.	.	.	.	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P	D	A	P	G	L
Query Conservation																																																									.	.	.	.
Alig confidence																					.																																				.	.	.	.
Template Conservation																					.
Template Sequence		R	D	C	L	Q	L	A	R	Y	F	G	V	R	A	S	A	H	A	Y	.	D	G	S	L	S	R	L	Y	A	L	F	A	Q	A	C	L	P	P	W	S	K	M	K	N	D	H	I	E	P	I	E	W	D	V	M	E	N	P	F	T	D	L	V	S	L	Q	P	S	K	G	M	V	H	I	P	K	G	K	G	I
Template Known Secondary structure												T								T	.	T		S												T	S			S	S	S		T	T	S		S								S	S		G	G	G	G	S	B					B	T	T							S	S	B	T
Template Predicted Secondary structure																					.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	T	E	I	N	M	E	I	V	N	R	Y
Template Known Secondary structure		S	S		B								T
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions