Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 67 Aligned Residues 335 % Identity 27% Template c2fkpC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:n-acylamino acid racemase; PDBTitle: the mutant g127c-t313c of deinococcus radiodurans n-2 acylamino acid racemase Resolution 2.00 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.											.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.										.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.										.
Query Sequence		V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	.	.	.	.	.	.	.	.	.	.	D	V	I	Y	Q	T	L	V	D	.	A	I	P	M	V	L	G	Q	E	V
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.										.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.										.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	E	A	A	E	I	V	V	A	R	L	P	L	K	.	.	.	.	.	.	.	.	.	.	.	T	H	K	V	V	P	L	L	I	L	H	G	E	G	V	Q	G	V	A	E	G	T	M	E	A	R	P	M	Y	R	E	E	T	I	A	G	A	L	D	L	L	R	G	T	F	L	P	A	I	L	G	Q	T	F
Template Known Secondary structure															B		.	.	.	.	.	.	.	.	.	.	.													T	T										B	S	S	S	S	S	S	S		B											T						T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.												.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	L	N	K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.														.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.														.	.	.	.	.	.
Template Sequence		A	N	P	E	A	V	S	D	A	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Y	R	G	N	R	M	A	R	A	M	V	E	M	A	A	W	D	L	W	A	R	T	L	G	V	P	L	C	T	L	L	G	.	G	H	K	E	Q	V	E	V	G	V	S	L	G	.	.	.	.	.	.
Template Known Secondary structure		S	S								T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S			S																					T		B						T	.				S				B						.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.														.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.																	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	T	D	L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	P	D	A	R	I	T	V	D	P	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.												.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.												.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	A	D	E	Q	A	T	V	D	L	V	R	R	H	V	E	Q	.	G	Y	R	R	I	K	L	K	I	K	P	.	.	.	G	W	D	V	Q	P	V	R	A	T	R	E	A	F	P	D	I	R	L	T	V	D	A	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S													T	T	.	T		S							B	T	.	.	.	T	B	S												S	S	S							T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.												.	.	.
Template SS confidence
																									145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.				.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.
Predicted Secondary structure																				.																																																												.
Query SS confidence																				.																																																												.
Query Sequence		G	A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H
Query Conservation																				.																																																												.
Alig confidence													.							.													.	.	.	.																																												.
Template Conservation													.																				.	.	.	.
Template Sequence		S	A	Y	T	L	A	D	A	G	R	L	.	R	Q	L	D	E	Y	D	L	T	Y	I	E	Q	P	L	A	W	D	D	.	.	.	.	L	V	D	H	A	E	L	A	R	R	I	R	T	P	L	C	L	D	E	S	V	A	S	A	S	D	A	R	K	A	L	A	L	G	A	G	G	V	I	N	L	K	V	A	R
Template Known Secondary structure		T				G	G	G					.		G	G	G	G	G			S						S		T	T		.	.	.	.	S											S	S					S	T	T			S											T	S		S						T	T	T
Template Predicted Secondary structure													.																				.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.					.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P	D	A
Query Conservation
Alig confidence																																																		.
Template Conservation																																																		.
Template Sequence		V	G	G	H	A	E	S	R	R	V	H	D	V	A	Q	S	F	G	A	P	V	W	C	G	G	M	L	E	S	G	I	G	R	A	H	N	I	H	L	S	C	L	S	N	F	R	L	P	.	G	D	T	S	S	A	S	R	Y	W	E	R	D	L	I	Q	E	P	L	E	A	V	D	G	L	M	P	V	P	Q	G
Template Known Secondary structure		T	T	S														T	T																						T	T	S	T	T	B		S		.	B	S				G	G	G	T	B	S	S		S	B	S	S					B	T	T							S
Template Predicted Secondary structure																																																		.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	G	V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	T	G	V	T	L	D	R	E	F	L	A	T	V
Template Known Secondary structure		S	B	T	S			B
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions