Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 76 Aligned Residues 344 % Identity 23% Template c1sjaA_ PDB info PDB header:lyase, isomerase Chain: A: PDB Molecule:n-acylamino acid racemase; PDBTitle: x-ray structure of o-succinylbenzoate synthase complexed2 with n-acetylmethionine Resolution 2.30 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.											.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.									.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.									.
Query Sequence		V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	.	.	.	.	.	.	.	.	.	.	V	I	Y	Q	T	L	V	D	.	A	I	P	M	V	L	G	Q	E	V
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.									.
Alig confidence																																										.											.	.	.	.	.	.	.	.	.	.									.
Template Conservation																																										.
Template Sequence		K	L	S	G	V	E	L	R	R	V	Q	M	P	L	V	A	P	F	R	T	S	F	G	T	Q	S	V	R	E	L	L	L	L	R	A	V	T	P	A	G	.	E	G	W	G	E	C	V	T	M	A	G	P	L	Y	S	S	E	Y	N	D	G	A	E	H	V	L	R	H	Y	L	I	P	A	L	L	A	A	E	D
Template Known Secondary structure																						T	T																S	S		.									B	S	S	S	S	S	S	S		B											T							T	S	S	S
Template Predicted Secondary structure																																										.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	L	N	K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.																.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.																.	.
Template Sequence		I	T	A	A	K	V	T	P	L	L	A	K	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	R	M	A	K	G	A	L	E	M	A	V	L	D	A	E	L	R	A	H	E	R	S	F	A	A	E	L	G	S	.	.	V	R	D	S	V	P	C	G	V	S	V	G	I	M	D	.	.
Template Known Secondary structure												T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						T		B						T		.	.			S				B								S	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.																.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.																	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		T	K	T	D	L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	.	P	D	A	R	I	T	V	D	P
Query Conservation																																																																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.											.	.	.																.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.											.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	P	Q	L	L	D	V	V	G	G	Y	L	D	E	.	G	Y	V	R	I	K	L	K	I	E	.	.	.	P	G	W	D	V	E	P	V	R	A	V	R	E	R	F	G	D	D	V	L	L	Q	V	D	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S															.	T		S							B	.	.	.	T	T	B	S													S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.											.	.	.
Template SS confidence
																												141	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.				.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																					.																																																												.
Query SS confidence																					.																																																												.
Query Sequence		N	G	A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.
Query Conservation																					.																																																												.
Alig confidence																.					.													.	.	.	.																																												.
Template Conservation																.																		.	.	.	.
Template Sequence		N	T	A	Y	T	L	G	D	A	P	Q	L	A	R	.	L	D	P	F	G	L	L	L	I	E	Q	P	L	E	E	E	D	.	.	.	.	V	L	G	H	A	E	L	A	R	R	I	Q	T	P	I	C	L	D	E	S	I	V	S	A	R	A	A	A	D	A	I	K	L	G	A	V	Q	I	V	N	I	K	P	G
Template Known Secondary structure		T	T		B		G	G	G						T	.	T	G	G	G			S						B		T	T		.	.	.	.								T	T	T		S	S					S	T	T			S											T			S						T	T
Template Predicted Secondary structure																.																		.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.					.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P	D
Query Conservation
Alig confidence																																																															.	.
Template Conservation																																																															.	.
Template Sequence		R	V	G	G	Y	L	E	A	R	R	V	H	D	V	C	A	A	H	G	I	P	V	W	C	G	G	M	I	E	T	G	L	G	R	A	A	N	V	A	L	A	S	L	P	N	F	T	L	P	G	D	T	S	A	S	D	R	F	Y	K	T	.	.	D	I	T	E	P	F	V	L	S	G	G	H	L	P	V	P	T
Template Known Secondary structure		T	T	T	S														T	T									S														T	S	T	T	B		S		B	S				G	G	G	T		S	S	.	.		S	S	S					S	S	S
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	G	L	G	V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	P	G	L	G	V	A	P	I	P	E	L	L	D	E	V
Template Known Secondary structure		S	S	B	T	S										T	T
Template Predicted Secondary structure
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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