Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 60 Aligned Residues 345 % Identity 21% Template c1mraA_ PDB info PDB header:racemase Chain: A: PDB Molecule:mandelate racemase; PDBTitle: mandelate racemase mutant d270n co-crystallized with (s)-atrolactate Resolution 2.10 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																				.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.
Query Sequence		V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	.	.	.	.	.	D	V	I	Y	Q	T	L	V	D	A	I	P	M	V	L	G	Q	E	V	A	R	L	N	K	V
Query Conservation																																																				.	.	.	.	.
Alig confidence																																																				.	.	.	.	.																				.
Template Conservation																																																																												.
Template Sequence		L	I	T	G	L	R	T	R	A	V	N	V	P	L	A	Y	P	V	H	T	A	V	G	T	V	G	T	A	P	L	V	L	I	D	L	A	T	S	A	G	V	V	G	H	S	Y	L	F	A	Y	T	P	V	A	L	K	S	L	K	Q	L	L	D	D	M	A	A	M	I	V	N	E	P	L	.	A	P	V	S	L
Template Known Secondary structure		B														S	S					S	S				S	S											T	T	S										S	S	G	G	G																T	T	S	B	S	.
Template Predicted Secondary structure																																																																												.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K	T	D	L	P
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.																													.						.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.																													.						.								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	M	L	A	K	R	F	C	L	A	G	Y	T	G	L	I	.	.	.	.	.	.	.	.	.	R	M	A	A	A	G	I	D	M	A	A	W	D	A	L	G	K	V	H	E	T	P	L	V	K	L	L	G	.	A	N	A	R	P	.	V	Q	A	Y	D	S	H	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T	T	T		S	S				.	.	.	.	.	.	.	.	.																			T	T		B					T	T	.						.								.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.																													.						.								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100										.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.		.	.	.	.	.	.	140
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	.	P	D	A	R	I	T	V	D	P	N	G	A	W	L	L
Query Conservation																																																																		.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																													.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	D	G	V	K	L	A	T	E	R	A	V	T	A	A	E	L	.	G	F	R	A	V	K	T	K	I	G	Y	P	A	L	D	Q	D	L	A	V	V	R	S	I	R	Q	A	V	G	D	D	F	G	I	M	V	D	Y	N	Q	S	L	D	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S																T	.	T		S									S	S																	S	S	S							T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
																			141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.
Predicted Secondary structure															.																																																												.
Query SS confidence															.																																																												.
Query Sequence		D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H	F	W	T	L	S
Query Conservation															.																																																												.
Alig confidence															.													.	.	.	.																																												.
Template Conservation																												.	.	.	.
Template Sequence		P	A	A	I	K	R	S	Q	A	L	Q	Q	E	G	V	T	W	I	E	E	P	T	L	Q	H	D	.	.	.	.	Y	E	G	H	Q	R	I	Q	S	K	L	N	V	P	V	Q	M	G	E	N	W	L	G	P	E	E	M	F	K	A	L	S	I	G	A	C	R	L	A	M	P	N	A	M	K	I	G	G	V	T
Template Known Secondary structure															T		S						S		T	T		.	.	.	.										T		S	S						T	T			S										T	T			S					B	T	T	T	T	T
Template Predicted Secondary structure																												.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.					.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P	D	A	P	G	L	G	V
Query Conservation
Alig confidence																								.	.	.	.	.	.																		.	.	.	.	.
Template Conservation																								.	.	.	.	.	.																		.	.	.	.	.
Template Sequence		G	W	I	R	A	S	A	L	A	Q	Q	F	G	I	P	M	S	S	H	L	F	Q	.	.	.	.	.	.	E	I	S	A	H	L	L	A	A	T	P	T	A	H	W	L	E	.	.	.	.	.	R	L	D	L	A	G	S	V	I	E	P	T	L	T	F	E	G	G	N	A	V	I	P	D	L	P	G	V	G	I
Template Known Secondary structure														T			B			B	S			.	.	.	.	.	.									T		T	T	B					.	.	.	.	.				S	S	T	T	T	B				S			S	S	S						S	S	S	B	T
Template Predicted Secondary structure																								.	.	.	.	.	.																		.	.	.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300							.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.						.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	D	W	E	Q	V	Q	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	W	R	E	K	E	I	G	K	Y
Template Known Secondary structure			B
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions