Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 108 Aligned Residues 318 % Identity 17% Template c1kkoB_ PDB info PDB header:lyase Chain: B: PDB Molecule:3-methylaspartate ammonia-lyase; PDBTitle: crystal structure of citrobacter amalonaticus2 methylaspartate ammonia lyase Resolution 1.33 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.															.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query Sequence		S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	I	Y	Q	T	L	V	D	.	A	I	P	M	V	L	G	Q	E	V	A	R	L	N	K	V	V	Q	Q	V
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation
Template Sequence		D	P	V	T	P	G	F	T	S	V	R	Q	A	G	E	C	V	S	V	Q	L	I	L	E	N	G	A	V	A	V	G	D	C	A	A	V	Q	Y	S	G	A	G	G	R	D	P	L	F	L	A	E	H	F	I	P	F	L	N	D	H	I	K	P	L	L	E	G	R	D	V	D	A	F	L	P	N	A	R	F	F
Template Known Secondary structure					S	T	T		S	S	S														T	T	S											T	T	T	T	S	T	T																		T					T	T		B		S		S
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.						140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence		H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	.	.	.	.	.	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K	T	D	L
Query Conservation																																																							.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.																											.			.	.	.	.	.																		.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.																											.																									.	.	.	.	.
Template Sequence		D	K	L	R	I	D	G	N	L	L	H	T	A	.	.	.	.	.	.	.	.	.	.	.	V	R	Y	G	L	S	Q	A	L	L	D	A	T	A	L	A	S	G	R	L	K	T	E	V	V	C	.	D	E	W	Q	L	P	C	V	P	E	A	I	P	L	F	G	Q	S	G	D	D	R	Y	I	.	.	.	.	.
Template Known Secondary structure							T	T							.	.	.	.	.	.	.	.	.	.	.																		T									.				T															T	T		T	T		.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.																											.																									.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.												130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.							.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.															.
Query SS confidence																																																				.	.	.	.	.	.															.
Query Sequence		P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	.	.	.	.	.	.	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	.	F	P	D	A	R	I	T	V	D
Query Conservation																																																				.	.	.	.	.	.															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.															.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	D	K	X	I	L	K	G	V	D	V	L	P	H	A	L	I	N	N	V	E	E	K	L	G	F	K	G	E	K	L	R	E	Y	V	R	W	L	S	D	R	I	L	S	L	R	S	S	P	R	Y	H	P	T	L	H	I	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T		S					T	T										T	T	S																			S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																							180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		235	.	.	.	.	240	.							.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.				.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280						.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.														.				.	.	.																								.	.	.	.	.
Query SS confidence									.	.	.	.	.	.														.				.	.	.																								.	.	.	.	.
Query Sequence		P	N	G	A	W	L	L	.	.	.	.	.	.	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	.	.	.	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	.	.	.	.	.	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H
Query Conservation									.	.	.	.	.	.														.				.	.	.																								.	.	.	.	.
Alig confidence									.	.	.	.	.	.														.				.	.	.																								.	.	.	.	.
Template Conservation
Template Sequence		V	Y	G	T	I	G	L	I	F	D	X	D	P	V	R	C	A	E	Y	I	A	S	L	E	K	E	A	Q	G	L	P	L	Y	I	E	G	P	V	D	A	G	N	K	P	D	Q	I	R	X	L	T	A	I	T	K	E	L	T	R	L	G	S	G	V	K	I	V	A	D	E	W	C	N	T	Y	Q	D	I	V	D
Template Known Secondary structure			T	T						T	T	T												T	T	G	G	G	T	T	S											S	S																			T									T	T			S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																.																													.
Query SS confidence																.																													.
Query Sequence		A	V	M	L	N	A	V	D	I	P	L	A	D	P	.	H	F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	.	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L
Query Conservation																.																													.
Alig confidence																.																													.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	T	D	A	G	S	C	H	X	V	Q	I	K	T	P	D	L	G	G	I	H	N	I	V	D	A	V	L	Y	C	N	K	H	G	X	E	A	Y	Q	G	G	T	C	N	E	T	E	I	S	A	R	T	C	V	H	V	A	L	A	A	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	R	X	L
Template Known Secondary structure					T	T			S						G	G	G	G	S	S	T													T	T									T	T	S																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380															.	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	N	P	L	E	I	K	N	G	K	I	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	P	G	X	G	F	D	E	G	L	N	I	V
Template Known Secondary structure				S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions