Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 81 Aligned Residues 342 % Identity 20% Template c1jpmB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:l-ala-d/l-glu epimerase; PDBTitle: l-ala-d/l-glu epimerase Resolution 2.25 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.									.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.										.
Query SS confidence																																																				.	.	.	.	.	.	.	.										.
Query Sequence		V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	.	.	.	.	.	.	.	.	D	V	I	Y	Q	T	L	V	D	.	A	I	P	M	V	L	G	Q	E	V	A	R
Query Conservation																																																				.	.	.	.	.	.	.	.										.
Alig confidence																																																				.	.	.	.	.	.	.	.										.
Template Conservation
Template Sequence		K	I	I	R	I	E	T	S	R	I	A	V	P	L	T	K	P	F	K	T	A	L	R	T	V	Y	T	A	E	S	V	I	V	R	I	T	Y	D	S	G	A	V	G	W	G	E	A	P	P	T	L	V	I	T	G	D	S	M	D	S	I	E	S	A	I	H	H	V	L	K	P	A	L	L	G	K	S	L	A	G
Template Known Secondary structure		B																				S	S																T	T	S										B	T	T	T	T		B												T						T	T		B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I	G	D	R	T	K
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.												.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.												.	.	.	.	.	.	.	.
Template Sequence		Y	E	A	I	L	H	D	I	Q	H	L	L	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	M	S	A	K	A	A	V	E	M	A	L	Y	D	G	W	A	Q	M	C	G	L	P	L	Y	Q	M	L	G	G	.	.	Y	R	D	T	L	E	T	D	Y	T	V	.	.	.	.	.	.	.	.
Template Known Secondary structure												S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					T	S	B					T	T		.	.			S				B					.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.												.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.																.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		T	D	L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	.	R	F	P	D	A	R	I	T	V	D	P	N	G
Query Conservation																																																																				.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																											.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	N	S	P	E	E	M	A	A	D	A	E	N	Y	L	K	Q	.	G	F	Q	T	L	K	I	K	V	G	K	D	D	I	A	T	D	I	A	R	I	Q	E	I	R	K	R	V	G	S	A	V	K	L	R	L	D	A	N	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	.	T									S	S	S																	G	G	G	S							T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
																							137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																		.	.		.																																																												.
Query SS confidence																		.	.		.																																																												.
Query Sequence		A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	.	.	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A	D	P	.
Query Conservation																		.	.		.																																																												.
Alig confidence																		.	.		.													.	.	.	.																																												.
Template Conservation																																		.	.	.	.
Template Sequence		G	W	R	P	K	E	A	V	T	A	I	R	K	M	E	D	A	G	L	G	I	E	L	V	E	Q	P	V	H	K	D	D	.	.	.	.	L	A	G	L	K	K	V	T	D	A	T	D	T	P	I	M	A	D	E	S	V	F	T	P	R	Q	A	F	E	V	L	Q	T	R	S	A	D	L	I	N	I	K	L	M
Template Known Secondary structure			S															T	T										S		T	T		.	.	.	.												S	S					S	T	T		S	S											T			S
Template Predicted Secondary structure																																		.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.					.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A	V	P	D
Query Conservation
Alig confidence																																																			.									.
Template Conservation																																																			.									.
Template Sequence		K	A	G	G	I	S	G	A	E	K	I	N	A	M	A	E	A	C	G	V	E	C	M	V	G	S	M	I	E	T	K	L	G	I	T	A	A	A	H	F	A	A	S	K	R	N	I	T	R	.	F	D	F	D	A	P	L	M	.	L	K	T	D	V	F	N	G	G	I	T	Y	S	G	S	T	I	S	M	P	G
Template Known Secondary structure				T	S														T	T								S	S																	T	T				.					G	G	G	G	.	B	S							S					T	T
Template Predicted Secondary structure																																																			.									.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		394	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	G	L	G	V	E	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	P	G	L	G	I	I	G	A
Template Known Secondary structure		S	S	B	T
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions