Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 26 Aligned Residues 346 % Identity 23% Template c1f9cA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:protein (muconate cycloisomerase i); PDBTitle: crystal structure of mle d178n variant Resolution 2.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.											60	.	.	.	.	.	.		.	.	.	70	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.								.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.								.
Query Sequence		S	S	P	V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	.	.	.	.	.	.	.	.	.	.	I	Y	Q	T	L	V	D	.	A	I	P	M	V	L	G
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.								.
Alig confidence					.																.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.								.
Template Conservation					.																.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	L	.	I	E	R	I	D	A	I	I	V	D	L	P	T	I	Q	.	.	.	.	.	.	.	.	.	.	Q	Q	T	L	V	V	L	R	V	R	C	S	D	G	V	E	G	I	G	E	A	T	T	I	G	G	L	A	Y	G	Y	E	S	P	E	G	I	K	A	N	I	D	A	H	L	A	P	A	L	I	G
Template Known Secondary structure				B	.													B			.	.	.	.	.	.	.	.	.	.												T	T	S										S	S	T	T	T	T	S	S													T	T	G	G	G	T	T	T
Template Predicted Secondary structure					.																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.		.	.	.	.	10	.	.	.	.	.	.	.	.	.	20											.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	V	A	R	L	N	K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Sequence		L	A	A	D	N	I	N	A	A	M	L	K	L	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	K	G	N	T	F	A	K	S	G	I	E	S	A	L	L	D	A	Q	G	K	R	L	G	L	P	V	S	E	L	L	G	.	G	R	V	R	D	S	L	E	V	A	W	T	L	A	S	G
Template Known Secondary structure		S	B	T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S																					T		B					T	T	.			S		S				B						S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.																.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		G	D	R	T	K	T	D	L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	.	P	D	A	R	I	T
Query Conservation																																																																											.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																													.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	R	D	I	A	E	A	R	H	M	L	E	I	R	.	R	H	R	V	F	K	L	K	I	G	A	N	P	V	E	Q	N	L	K	H	V	V	T	I	K	R	E	L	G	D	S	A	S	V	R
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T	.	S		S							S	S	S																	G	G	G	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		146																													.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		V	D	P	N	G	A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A	V	D	I	P	L	A
Query Conservation																								.
Alig confidence																								.													.	.	.	.
Template Conservation																																					.	.	.	.
Template Sequence		V	D	V	N	Q	Y	W	D	E	S	Q	A	I	R	A	C	Q	V	L	G	D	N	G	I	D	L	I	E	Q	P	I	S	R	I	N	.	.	.	.	R	G	G	Q	V	R	L	N	Q	R	T	P	A	P	I	M	A	D	E	S	I	E	S	V	E	D	A	F	S	L	A	A	D	G	A	A	S	I	F	A	L
Template Known Secondary structure					T	T		B														T	T	T								B		T	T		.	.	.	.												S	S					S	T	T		S	S											T			S
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.					.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		312	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		D	P	.	H	F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I	K	N	G	K	I	A
Query Conservation				.
Alig confidence				.																																																														.
Template Conservation																																																																		.
Template Sequence		K	I	A	K	N	G	G	P	R	A	V	L	R	T	A	Q	I	A	E	A	A	G	I	G	L	Y	G	G	T	M	L	E	G	S	I	G	T	L	A	S	A	H	A	F	L	T	L	R	Q	L	T	W	G	T	E	L	F	G	P	L	L	L	T	E	.	E	I	V	N	E	P	P	Q	Y	R	D	F	Q	L	H
Template Known Secondary structure							T	S															T								S															T	T		S			T	T		B				G	G	G	G	B	S		.		S	B	S	S						S	S
Template Predicted Secondary structure																																																																		.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	D	A	P	G	L	G	V	E	L	D	W	E	Q	V	Q	K	A	H	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	R	T	P	G	L	G	L	T	L	D	E	A	R	L	A	R	F	A	R
Template Known Secondary structure						S	B	T	S			B									B
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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