Return to main results Retrieve Phyre Job Id

Job DescriptionP75980
Confidence8.08%DateThu Jan 5 12:16:53 GMT 2012
Rank3Aligned Residues27
% Identity15%Templated1c0ma1
SCOP infoSH3-like barrel DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase
Resolution2.53

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   105....110.........120.........130.
Predicted Secondary structure 







Query SS confidence 


























Query Sequence  TCLCLRGNFYAYKVKAFGEVAELLPVD
Query Conservation    


 




 
 
  
    
 

 
Alig confidence 


























Template Conservation 
 
   







  
   
 
 
 
Template Sequence  WNVLVWGRGYAAVKNRDTDKVIWVPSR
Template Known Secondary structure 
SSTTT

GG
Template Predicted Secondary structure 






Template SS confidence 


























   237..240.........250.........260...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions