Job Description P17115 Confidence 95.46% Date Thu Jan 5 11:35:59 GMT 2012 Rank 122 Aligned Residues 135 % Identity 13% Template c2zkqb_ PDB info PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		A	S	R	L	P	E	R	L	G	D	D	F	V	R	A	A	N	I	I	L	H	C	E	G	K	V	V	V	S	G	I	G	K	.	S	G	H	I	G	K	K	I	A	A	T	L	A	S	T	G	T	P	A	F	F	V	H	P	A	E	A	L	H	G	D	L	G	M	I	E	S	R	D	V	M	L	F	I	S	Y
Query Conservation																																			.
Alig confidence																			.	.															.																									.	.
Template Conservation																			.	.																																								.	.
Template Sequence		L	K	R	T	W	E	K	L	L	L	A	A	R	A	I	V	A	.	.	I	E	N	P	A	D	V	S	V	I	S	S	R	N	T	G	Q	R	A	V	L	K	F	A	A	A	T	G	A	T	P	I	A	G	R	F	T	P	G	.	.	F	T	N	Q	I	Q	A	A	F	R	E	P	R	L	L	V	V	T	D	P
Template Known Secondary structure																			.	.	S	S		G	G	G							S																					S	S					.	.				T	T		S	S					S					S		T
Template Predicted Secondary structure																			.	.																																								.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	G	A	K	E	L	D	L	I	I	P	R	L	E	D	K	S	I	A	L	L	A	M	T	G	K	P	T	S	P	L	G	L	A	A	K	A	V	L	D	I	S	V	E	R	E	A	C	P	M	H	L	A	P	T	S	S	T	V	N	T	L	M	M	G	D	A	L	A	M	A	V	M	Q	A	R	G
Query Conservation
Alig confidence							.	.	.	.																							.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.																							.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	D	H	Q	.	.	.	.	P	L	T	E	A	S	Y	V	N	L	P	T	I	A	L	C	N	T	D	S	P	L	.	.	R	Y	V	D	I	A	I	P	C	N	N	K	.	.	.	.	.	.	.	.	.	.	.	.	G	A	H	S	V	G	L	M	W	W	M	L	A	R	E	V	L	R	M	R	G
Template Known Secondary structure		T	T	T			.	.	.	.									T									T	T				.	.	T	T		S					S		S	S	.	.	.	.	.	.	.	.	.	.	.	.																					S
Template Predicted Secondary structure							.	.	.	.																							.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.													.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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