Job Description P17115 Confidence 88.83% Date Thu Jan 5 11:35:59 GMT 2012 Rank 146 Aligned Residues 142 % Identity 17% Template c2v45A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		28	.	30	.	.	.	.	.	.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.																	.	.	80	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.																										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	D	D	F	V	R	A	A	N	I	I	L	H	C	.	.	.	.	.	E	G	K	V	V	V	S	G	I	G	K	S	G	H	I	G	K	K	I	A	A	T	L	A	S	.	.	T	G	T	P	A	F	F	V	H	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	L	H	G	D	L
Query Conservation																.	.	.	.	.																										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.																										.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	A	L	D	L	M	A	S	R	F	R	S	S	I	D	M	Y	G	P	N	S	V	A	W	Y	G	S	G	Q	C	L	T	E	E	S	Y	V	A	N	K	I	F	K	G	G	F	G	T	N	N	V	D	G	N	P	R	L	C	M	A	S	A	V	G	G	Y	V	T	S	F	G	K	D	E	P	M	G	T	Y
Template Known Secondary structure																					G	G	G							T	T	S														T	T	T								G	G	G	G	T	T												S	S		S		S	S		G
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																.	.																	.	.
Query SS confidence																.	.																	.	.
Query Sequence		G	M	I	E	S	R	D	V	M	L	F	I	S	Y	.	.	S	G	G	A	K	E	L	D	L	I	I	P	R	L	E	D	.	.	K	S	I	A	L	L	A	M	T	G	K	P	T	S	P	L	G	L	A	A	K	A	V	L	D	I	S	V	E	R	E	A	C	P	M	H	L	A	P	T	S	S	T	V	N	T
Query Conservation																.	.																	.	.
Alig confidence																.	.																	.	.									.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	I	D	Q	A	T	C	F	F	I	I	G	S	N	T	S	E	A	H	P	V	L	F	R	R	I	A	R	R	K	Q	V	E	P	G	V	K	I	I	V	A	.	D	P	R	R	T	N	T	S	R	I	A	D	M	H	V	A	F	R	P	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D
Template Known Secondary structure		G	G	G	G	T		S						S							S															T	T							.		S	B			G	G	G	G	G		S							T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.																.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	M	G	D	A	L	A	M	A	V	M	Q	A	R	G	F	N	E	E	D	F	A	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	F	M	H	S	M	A	W	V	I	I	N	E	E	L	D	N	P	R	F	W	Q	R	Y
Template Known Secondary structure															T	T		S
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions