Job Description P17115 Confidence 86.60% Date Thu Jan 5 11:35:59 GMT 2012 Rank 152 Aligned Residues 142 % Identity 13% Template c2nyaF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli Resolution 2.50 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																										.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.																										.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	D	D	F	V	R	A	A	N	I	I	L	H	C	.	.	.	.	.	E	G	K	V	V	V	S	G	I	G	K	S	G	H	I	G	K	K	I	A	A	T	L	A	S	.	.	T	G	T	P	A	F	F	V	H	P	A	E	A	L	H	G	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.	.	.	.	.																										.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.																										.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	Q	A	F	D	V	M	E	E	K	F	K	T	A	L	K	E	K	G	P	E	S	I	G	M	F	G	S	G	Q	W	T	I	W	E	G	Y	A	A	S	K	L	F	K	A	G	F	R	S	N	N	I	D	P	N	A	R	H	C	M	A	S	A	V	V	G	F	M	R	T	F	G	M	D	E	P	M	G	C	Y
Template Known Secondary structure																			T		G	G	G							T	T	S															T	S								G	G	G	G	T	T												S	S		S		S			G
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																													.	.	.	.
Query SS confidence																													.	.	.	.
Query Sequence		G	M	I	E	S	R	D	V	M	L	F	I	S	Y	S	G	G	A	K	E	L	D	L	I	I	P	R	.	.	.	.	L	E	D	K	S	I	A	L	L	A	M	T	G	K	P	T	S	P	L	G	L	A	A	K	A	V	L	D	I	S	V	E	R	E	A	C	P	M	H	L	A	P	T	S	S	T	V	N	T
Query Conservation																													.	.	.	.
Alig confidence																													.	.	.	.												.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	D	I	E	Q	A	D	A	F	V	L	W	G	A	N	M	A	E	M	H	P	I	L	W	S	R	I	T	N	R	R	L	S	N	Q	N	V	T	V	A	V	L	.	S	T	Y	Q	H	R	S	F	E	L	A	D	N	G	I	I	F	T	P	Q	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V
Template Known Secondary structure		G	G	G	G	G		S						S							S													T		T	T							.		S	S	B		T	T	G	G	G		S							T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.														.	230
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	M	G	D	A	L	A	M	A	V	M	Q	A	R	G	F	N	E	E	D	F	A	R	S	H
Query Conservation
Alig confidence					.	.										.
Template Conservation					.	.										.
Template Sequence		I	L	N	.	.	Y	I	A	N	Y	I	I	Q	N	.	N	A	I	N	Q	D	F	F	S	K	H
Template Known Secondary structure					.	.									T	.	T
Template Predicted Secondary structure					.	.										.
Template SS confidence
		231	.	.			.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions