Job Description P17115 Confidence 94.01% Date Thu Jan 5 11:35:59 GMT 2012 Rank 126 Aligned Residues 138 % Identity 14% Template c2dg2D_ PDB info PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein Resolution 2.45 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.				.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.												40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	R	Q	T	L	M	L	E	L	Q	E	A	S	R	.	.	.	L	P	E	R	L	G	D	D	F	V	R	A	A	N	I	I	L	.	.	.	.	.	.	.	.	.	.	.	H	C	E	G	K	V	V	V	S	G	I	G	K	S	G	H	I	G	K	K	I	A	A	T	L	A	S	T	G	T	P	A	F	F	V
Query Conservation																.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	E	E	A	Q	A	V	D	Q	E	L	F	N	E	Y	Q	F	S	V	D	Q	L	X	E	L	A	G	L	S	C	A	T	A	I	A	K	A	Y	P	P	T	S	X	S	K	S	P	P	T	V	L	V	I	C	G	P	G	N	N	G	G	D	G	L	V	C	A	R	H	L	K	L	F	G	Y	Q	P	T	I	Y
Template Known Secondary structure															S	S																							S		G	G	G	S	S	S	S	S									S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		75	.	.	.	.	80	.	.	.	.																								.	.	.	.	.	90	.	.	.	.					.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.								.																							.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.								.																							.	.	.
Query Sequence		H	P	A	E	A	L	H	G	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	I	E	S	R	D	V	M	L	.	.	.	.	F	I	S	Y	S	G	G	.	A	K	E	L	D	L	I	I	P	R	L	E	D	K	S	I	A	L	L	A	M	T	.	.	.
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.								.																							.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.								.																							.	.	.
Template Conservation
Template Sequence		Y	P	K	R	P	N	K	P	L	F	T	G	L	V	T	Q	C	Q	K	X	D	I	P	F	L	G	E	X	P	P	E	P	X	X	V	D	E	L	Y	E	L	V	V	D	A	I	F	G	F	S	F	K	G	D	V	R	E	P	F	H	S	I	L	S	V	L	S	G	L	T	V	P	I	A	S	I	D	I	P	S
Template Known Secondary structure			S	S				S													T	T			B		S	S			S	S									S						S			T	T							T	T									T	T		S	S							.		T
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
					124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	G	K	P	T	S	P	L	G	L	A	A	K	A	V	L	D	I	S	V	E	R	E	A
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		G	W	D	V	E	K	G	N	P	S	G	I	Q	P	D	L	L	I	S	L	T	A	P	K	K	S
Template Known Secondary structure		T	S	B	T	T	T	B		T	T	S				S						S	S		B	G	G
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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