Job Description Q46821 Confidence 100.00% Date Thu Jan 5 12:34:46 GMT 2012 Rank 1 Aligned Residues 397 % Identity 28% Template c3qe7A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa Resolution 2.78 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	D	E	V	D	R	I	L	S	P	G	K	L	I	I	L	G	L	Q	H	V	L	V	M	Y	A	G	A	V	A	V	P	L	M	I	G	D	R	L	G	L	S	K	E	A	I	A	M	L	I	S	S	D	L	F	C	C	G	I	V	T	L	L	Q	C	I	G	I	G	R	F	M	G	I	R	L	P	V	I
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Template Sequence		R	A	I	G	V	S	E	R	P	P	L	L	Q	T	I	P	L	S	L	Q	H	L	F	A	M	F	G	A	T	V	L	V	P	V	L	F	H	I	N	.	.	.	.	.	.	.	.	.	.	.	P	A	T	V	L	L	F	N	G	I	G	T	L	L	Y	L	F	.	.	.	.	I	C	K	G	K	I	P	A	Y
Template Known Secondary structure				B		T	T																													T	T	T	S		.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.		T	T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.												.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.						.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		M	S	V	T	F	A	A	V	T	P	M	I	A	I	G	M	N	P	D	I	G	L	L	G	I	F	G	A	T	I	A	A	G	F	I	T	T	L	L	A	P	L	.	.	.	.	.	I	G	R	L	M	P	L	F	P	P	L	V	T	G	V	V	I	T	S	I	G	L	S	I	I	Q	V	G	I	D	W	A	A
Query Conservation																																												.	.	.	.	.
Alig confidence																	.	.	.																									.	.	.	.	.
Template Conservation																	.	.	.
Template Sequence		L	G	S	S	F	A	F	I	S	P	V	L	L	L	L	.	.	.	P	L	G	Y	E	V	A	L	G	G	F	I	M	C	G	V	L	F	C	L	V	S	F	I	V	K	K	A	G	T	G	W	L	D	V	L	F	P	P	A	A	M	G	A	I	V	A	V	I	G	L	E	L	A	G	V	A	A	G	M	A	G
Template Known Secondary structure						G	G	G								G	.	.	.	G	G																									T	T		S																																T
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.				.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	K	G	N	P	Q	Y	G	N	P	V	Y	L	G	I	S	F	A	V	L	I	F	I	L	L	I	T	R	Y	A	K	G	F	M	S	N	V	A	V	L	L	G	I	V	F	G	F	L	L	S	W	M	M	N	E	V	N	L	S	G	L	H	D	A	S	W	F	A	I	V	T	P	M	S	F	G	M	P	I
Query Conservation
Alig confidence																																																																												.	.	.
Template Conservation																																																																												.	.	.
Template Sequence		L	L	P	A	E	G	Q	T	P	D	S	K	T	I	I	I	S	I	T	T	L	A	V	T	V	L	G	S	V	L	F	R	G	F	L	A	I	I	P	I	L	I	G	V	L	V	G	Y	A	L	S	F	A	M	G	I	V	D	T	T	P	I	I	N	A	H	W	F	A	L	P	T	L	Y	.	.	.	T	P	R
Template Known Secondary structure		S	S		B	T	T	B																							S	S	S	T	T	T	T	T																				T	T	S	S					S		S	S							.	.	.
Template Predicted Secondary structure																																																																												.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		F	D	P	V	S	I	L	T	M	T	A	V	L	I	I	V	F	I	E	S	M	G	M	F	L	A	L	G	E	.	I	V	G	R	K	L	S	S	H	D	I	I	R	G	L	R	V	D	G	V	G	T	M	I	G	G	T	F	N	S	F	P	H	T	S	F	S	Q	N	V	G	L	V	S	V	T	R	V	H	S
Query Conservation																															.
Alig confidence																															.
Template Conservation
Template Sequence		F	E	W	F	A	I	L	T	I	L	P	A	A	L	V	V	I	A	E	H	V	G	H	L	V	V	T	A	N	I	V	K	K	D	L	L	R	D	P	G	L	H	R	S	M	F	A	N	G	L	S	T	V	I	S	G	F	F	G	S	T	P	N	T	T	Y	G	E	N	I	G	V	M	A	I	T	R	V	Y	S
Template Known Secondary structure											T																						T	S		T																								T																		T	B
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.		.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		R	W	V	C	I	S	S	G	I	I	L	I	L	F	G	M	V	P	K	M	A	V	L	V	A	S	I	P	Q	F	V	L	G	G	A	G	L	V	M	F	G	M	V	L	A	T	G	I	R	I	L	S	R	C	N	Y	T	.	T	N	R	Y	N	L	Y	I	V	A	I	S	L	G	V	G	M	T	P	T	L	S
Query Conservation																																																											.
Alig confidence																																																											.
Template Conservation
Template Sequence		T	W	V	I	G	G	A	A	I	F	A	I	L	L	S	C	V	G	K	L	A	A	A	I	Q	M	I	P	L	P	V	M	G	G	V	S	L	L	L	Y	G	V	I	G	A	S	G	I	R	V	L	I	E	S	K	V	D	Y	N	K	A	Q	N	L	I	L	T	S	V	I	L	I	I	G	V	S	G	A	K	V
Template Known Secondary structure																T										T	T	S																											T	T	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	F	F	S	K	L	P	A	V	L	Q	P	L	L	H	S	G	I	M	L	A	T	L	S	A	V	V	L	N	V	F	F	N
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.
Template Sequence		N	.	.	.	.	.	.	.	.	.	I	G	A	A	E	L	K	G	M	A	L	A	T	I	V	G	I	G	L	S	L	I	F	K
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	S	S	S																					T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.
Template SS confidence
		383										.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.