Job Description Q46821 Confidence 2.55% Date Thu Jan 5 12:34:46 GMT 2012 Rank 64 Aligned Residues 400 % Identity 10% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	L	G	L	Q	H	V	L	V	M	Y	A	G	A	V	A	V	P	L	M	I	G	D	R	L	G	L	S	K	E	A	I	A	M	L	I	S	S	D	L	F	C	C	G	I	V	T	L	L	Q	C	I	G	I	G	R	F	M	G	I	R	L	P	V	I	M	S	V	T	F	A	A	V	T	P	M	I	A	I
Query Conservation
Alig confidence																																																											.
Template Conservation																																																											.
Template Sequence		P	F	A	L	L	C	S	L	F	F	L	W	A	V	A	N	N	L	N	D	I	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	.	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y	A	L	G	A	A	L	F	W
Template Known Secondary structure																													T	T			T	T													T	T											.	S																			T
Template Predicted Secondary structure																																																											.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																														.											.	.	.	.
Query SS confidence																														.											.	.	.	.
Query Sequence		G	M	N	P	D	I	G	L	L	G	I	F	G	A	T	I	A	A	G	F	I	T	T	L	L	A	P	L	.	I	G	R	L	M	P	L	F	P	P	.	.	.	.	L	V	T	G	V	V	I	T	S	I	G	L	S	I	I	Q	V	G	I	D	W	A	A	G	G	K	G	N	P	Q	Y	G	N	P	V	Y	L
Query Conservation																														.											.	.	.	.
Alig confidence																														.											.	.	.	.
Template Conservation
Template Sequence		P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V	P	H	Q	S	Q	D	V	L
Template Known Secondary structure						T	T																														S	S		G	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	S	F	A	V	L	I	F	I	L	L	I	T	R	Y	A	K	G	F	M	S	N	V	A	V	L	L	G	I	V	F	G	F	L	L	S	W	M	M	N	E	V	N	L	S	G	L	H	D	A	S	W	F	A	I	V	T	P	M	S	F	G	M	P	I	F	D	P	V	S	I	L	T	M	T	A	V	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	R	L	A	R	I	R	H	W	R	W	A	V	L	A	Q	F	C
Template Known Secondary structure				S																	T	T																			S						T	T	T					S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	F	I	E	S	M	G	M	F	L	A	L	G	E	I	V	G	R	K	L	S	S	H	D	I	I	R	G	L	R	V	D	G	V	G	T	M	I	G	G	T	F	N	S	F	P	H	T	S	F	S	Q	N	V	G	L	V	S	V	T	R	V	H	S	R	W	V	C	I	S	S	G	I	I	L	I	L	F	G
Query Conservation
Alig confidence																									.	.	.																													.	.	.	.	.	.	.
Template Conservation																									.	.	.																													.	.	.	.	.	.	.
Template Sequence		Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	.	.	.	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	.	.	.	.	.	.	.	R	F	A	P	H	K	V	L	A	A	Y	A	L	I	A	M	A	L	C
Template Known Secondary structure																					S	T	T		.	.	.																													.	.	.	.	.	.	.		S
Template Predicted Secondary structure																									.	.	.																													.	.	.	.	.	.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.				.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320								.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	P	K	M	A	V	L	V	A	S	I	P	Q	F	V	L	G	G	A	G	L	V	M	F	G	M	V	L	A	T	G	I	R	I	L	S	R	C	N	Y	T	T	N	R	Y	N	L	Y	I	V	A	I	S	L	G	V	G	M	T	P	T	L	S	H	D	F	F	S	K	L	P	A	V	L	Q	P	L	L	H
Query Conservation
Alig confidence					.	.	.	.																																				.	.
Template Conservation					.	.	.	.																																				.	.
Template Sequence		L	I	S	.	.	.	.	A	F	A	G	G	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	.	.	Q	D	T	K	Y	G	S	S	F	I	V	M	T	I	I	G	G	G	I	V	T	P	V	M	G	F	V	S	D	A	A	G	N	I	P	T
Template Known Secondary structure					.	.	.	.			S																	T	T											S	S		G	.	.	G	G											G	G	G																	T	S	S	G	G
Template Predicted Secondary structure					.	.	.	.																																				.	.
Template SS confidence
		340	.	.					.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	I	M	L	A	T	L	S	A	V	V	L	N	V	F	F	N	G	Y	Q	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	L	I	P	A	L	C	F	A	V	I	F	I	F	A	R	F	R	S	Q	T
Template Known Secondary structure		G	G															T	S
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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