Job Description Q46821 Confidence 2.35% Date Thu Jan 5 12:34:46 GMT 2012 Rank 73 Aligned Residues 336 % Identity 11% Template c3b9yA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Resolution 1.85 Å

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		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	G	F	I	T	T	L	L	A	P	L	I	G	R	L	M	P	L	F	P	P	L	V	T	G	V	V	I	T	S	I	G	L	S	I	I	Q	V	G	I	D	W	A	A	G	G	K	G	N	P	Q	Y	G	N	P	V	Y	L	G	I	S	F	A	V	L	I	F	I	L	L	I	T	R	Y	A	K	G	F	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	A	M	L	L	V	G	F	G	F	L	M	V	F	V	R	R	Y	G	F	S	A	T	T	G	T	Y	L	V	V	A	T	G	L	P	L	Y	I	L	L	R	A	N	G	I	F	G	H	A	L	T	P	H	S	V	D	A	V	I	Y	A	E	F	A	V	A	T	G	L	I	A	M	G	A	V	L	G	R	L
Template Known Secondary structure														G	G	G	S	T	T																										T	T	T	T	S	S				S	S	S																						T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	V	A	V	L	L	G	I	V	F	G	F	L	L	S	W	M	M	N	E	V	N	L	S	G	L	H	D	A	S	W	F	A	I	V	T	P	M	S	F	G	M	P	I	F	D	P	V	S	I	L	T	M	T	A	V	L	I	I	V	F	I	E	S	M	G	M	F	L	A	L	G	E	I	V	G	R	K	L
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.																																								.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.																																								.	.	.
Template Sequence		R	V	F	Q	Y	A	L	L	A	L	F	I	V	P	V	Y	L	L	N	E	W	L	.	.	.	.	.	.	.	.	.	V	L	D	N	A	S	G	L	T	E	G	F	Q	D	S	A	G	S	I	A	I	H	A	F	G	A	Y	F	G	L	G	V	S	I	A	L	T	T	A	.	.	.	A	Q	R	A	Q	P	I
Template Known Secondary structure																								.	.	.	.	.	.	.	.	.		T	T		T	T	S	S		T	T				T	T		T	T	T	T																			.	.	.				T	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																																								.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.										.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300																										.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	S	H	D	I	I	R	G	L	R	V	D	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	M	I	G	G	T	F	N	S	F	P	H	T	S	F	S	Q	N	V	G	L	V	S	V	T	R	V	H	S	R	W	V	C	I	S	S	G	I	I	L
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Template Conservation																																																													.	.	.	.	.
Template Sequence		E	S	D	A	T	S	D	R	F	S	M	L	G	S	M	V	L	W	L	F	W	P	S	F	A	T	A	I	V	P	F	E	Q	M	P	Q	T	I	V	N	T	L	L	A	L	C	G	A	T	L	A	T	Y	F	L	S	A	L	F	.	.	.	.	.	H	K	G	K	A	S	I	V	D	M	A	N	A	A	L	A
Template Known Secondary structure																												T	T	S		G	G	G																											.	.	.	.	.	T	T	T											T	T
Template Predicted Secondary structure																																																													.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.						.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		342	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		I	L	F	G	M	V	P	K	.	.	M	A	V	L	V	A	S	I	P	Q	F	V	L	G	G	A	G	L	V	M	F	G	M	V	L	A	T	G	I	R	I	L	S	R	C	N	Y	T	T	N	R	Y	N	L	Y	I	V	A	I	S	L	G	V	G	M	T	P	T	L	S	H	D	F	F	S	K	L	P	A	V
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		G	G	V	A	I	G	S	V	C	N	I	V	G	P	V	G	A	F	V	I	G	L	L	G	G	A	I	S	V	V	G	F	V	F	I	Q	P	M	L	E	S	K	A	K	T	I	D	T	C	G	V	H	N	L	H	G	L	P	G	L	L	G	G	F	S	A	I	L	I	V	P	G	I	A	V	A	Q	L	T	G
Template Known Secondary structure							T	T	T	T	T	T	S																						T									S					T	T						T	T														S	T	T
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.					.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence		L	Q	P	L	L	H	S	G	I	M	L	A	T	L	S	A	V	V	L	N	V	F	F	N	G	Y	Q	H	H	A	D	L	V	K	.	.	.	.	E	S	V	S	D	K	D	L	K	V	R	T	V	R	M	W	L	L	M	R	K	L	K	K	N	E
Query Conservation																																				.	.	.	.
Alig confidence																																				.	.	.	.
Template Conservation
Template Sequence		I	G	I	T	L	A	L	A	L	I	G	G	V	I	A	G	A	L	I	K	L	T	G	T	T	K	Q	A	Y	E	D	S	H	E	F	I	H	L	A	G	P	E	D	E	H	K	A	E	R	L	V	L	E	A	K	T	E	I	Q	G	L	K	N	R
Template Known Secondary structure																						T	T				S	S	T	T		G	G	G	T	S	S	S				G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions