Job Description P37683 Confidence 35.02% Date Thu Jan 5 11:56:58 GMT 2012 Rank 102 Aligned Residues 96 % Identity 9% Template c2rdeB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vca0042; PDBTitle: crystal structure of vca0042 complexed with c-di-gmp Resolution 1.92 Å

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		262	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.				.	.	.	.
Predicted Secondary structure												.																																																															.	.	.
Query SS confidence												.																																																															.	.	.
Query Sequence		A	Q	F	R	Q	N	S	L	L	R	.	L	A	P	G	D	D	A	E	V	V	F	N	A	L	P	G	K	V	F	S	G	K	L	A	A	I	S	P	A	V	P	G	G	A	Y	Q	S	T	G	T	L	Q	T	L	N	T	A	P	G	S	D	G	V	I	A	T	I	E	L	D	E	H	.	.	.	T	D	L	S
Query Conservation												.																																																															.	.	.
Alig confidence												.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	I	N	S	T	D	A	L	A	M	V	E	H	S	S	E	L	T	L	S	I	T	T	P	V	G	T	K	F	V	C	R	T	P	F	I	G	T	H	T	D	K	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	V	E	M	P	K	I	S	A	D	D	L	Q	Y
Template Known Secondary structure											T	T	S		T	T										S	S	S														T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.																						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		A	L	P	D	G	I	Y	A	Q	V	A	V	Y	S	D	H	F	.	.	S	H	V	S	V	M	R	K	V	L	L	R	M	T	S	W	V	H	Y	L	Y	L	D	H
Query Conservation																			.	.
Alig confidence																			.	.
Template Conservation
Template Sequence		F	F	Q	E	G	F	W	M	N	I	R	A	I	S	P	R	G	E	G	A	L	I	H	F	R	S	Q	L	M	H	I	L	Q	E	P	V	P	M	A	F	L	S	I
Template Known Secondary structure					T	T											S	B	T																S	S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions