Job Description P37683 Confidence 99.94% Date Thu Jan 5 11:56:58 GMT 2012 Rank 2 Aligned Residues 228 % Identity 21% Template c2f1mA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra Resolution 2.71 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	P	Y	T	F	K	A	Q	K	A	V	I	S	I	P	V	V	P	Q	V	T	G	V	V	I	E	V	T	D	K	K	N	T	L	I	K	K	G	E	V	L	F	R	L	D	P	T	R	Y	Q	A	R	V	D	R	L	M	A	D	I	V	T	A	E	H	K	Q	R	A	L	G	A	E	L	D	E	M	A	A
Query Conservation
Alig confidence										.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	T	E	L	P	G	R	T	.	S	A	Y	R	I	A	E	V	R	P	Q	V	S	G	I	I	L	K	R	N	F	K	E	G	S	D	I	E	A	G	V	S	L	Y	Q	I	D	P	A	T	Y	Q	A	T	Y	D	S	A	K	G	D	L	A	K	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										.			S								S	S									S		T	T					T	T	S		S																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	Q	Q	A	K	A	T	R	D	K	F	A	K	E	Y	Q	R	Y	A	R	G	S	Q	A	K	V	N	P	F	S	E	R	D	I	D	V	A	R	Q	N	Y	L	A	Q	E	A	S	V	K	S	S	A	A	E	Q	K	Q	I	Q	S	Q	L	D	S	L	V	L	G	E	H	S	Q	I	A	S	L	K	A	Q
Query Conservation
Alig confidence		.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	A	A	A	N	I	A	Q	L	T	V	N	R	Y	Q	K	L	L	G	T	Q	Y	I	S	K	Q	E	Y	D	Q	A	L	A	D	A	Q	Q	A	N	A	A	V	T	A	A	K	A	A	V	E	T	A	R	I	N	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.															T	T	T	T	S	T	T																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	E	A	K	Y	N	L	E	Q	T	I	V	R	A	P	S	D	G	Y	V	T	Q	V	L	I	R	P	G	T	Y	A	A	S	L	P	L	R	P	V	M	V	F	I	P	D	Q	K	R	Q	I	V	A	Q	F	R	Q	N	S	L	L	R	L	A	P	G	D	D	A	E	V	V	F	N	A	L	P	G	K	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	Y	T	K	V	T	S	P	I	S	G	R	I	G	K	S	N	V	T	E	G	A	L	V	Q	N	G	Q	A	T	A	L	A	T	V	Q	Q	L	D	P	I	Y	V	D	V	T	Q	S	S	N	D	.	.	.	.	.	X	K	A	K	V	S	L	I	T	S	D	G	I	K	F	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	T	T					S	S								S	S		T	T					T	T		S	S		S							S	S									T	T	T	.	.	.	.	.										S	S	S		B		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.
Template SS confidence
											173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	G	K	L	A	A	I	S	P	A	V	P	G	G	A	Y	Q	S	T	G	T	L	Q	T	L	N	T	A	P	G	S	D	G	V	I	A	T	I	E	L	D	E	H	T	D	L	S	A	L	P	D	G	I	Y	A	Q	V	A	V
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Sequence		Q	D	G	T	L	E	F	S	D	V	T	V	D	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	S	I	T	L	R	A	I	F	P	N	P	D	H	T	.	.	X	X	P	G	X	F	V	R	A	R	L
Template Known Secondary structure		S		B			S	S	S						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S												T	T			.	.			S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270																	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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