Job Description P07648 Confidence 30.47% Date Thu Jan 5 11:00:26 GMT 2012 Rank 30 Aligned Residues 124 % Identity 19% Template d1at3a_ SCOP info Herpes virus serine proteinase, assemblin Herpes virus serine proteinase, assemblin Herpes virus serine proteinase, assemblin Resolution 2.50

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		929	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.																							.	.	.	.	980	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Query Sequence		D	R	V	I	A	C	R	Q	P	G	Q	S	M	E	I	D	L	A	C	N	G	V	Q	I	T	G	W	L	P	Q	V	Q	P	D	G	L	L	R	W	R	P	S	L	L	S	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	M	Q	L	W	L	.	.	.	.
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template Conservation
Template Sequence		D	T	V	R	A	A	L	P	P	E	N	P	L	P	I	N	V	D	H	R	A	R	C	E	V	G	R	V	L	A	V	V	N	D	P	R	G	P	F	F	V	G	L	I	A	C	V	Q	L	E	R	V	L	E	T	A	A	S	A	A	I	L	S	R	E	E	R	L	L	Y	L	I	T	N	Y	L	P	S	V	S
Template Known Secondary structure						T	T		S		S	S							T	T		T	T													T	T																												S												S
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
												983	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.				.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.			.	.	.	.	.	.	1040	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																									.	.	.																												.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																									.	.	.																												.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	E	H	L	V	Y	C	A	S	G	G	N	G	E	S	R	L	F	L	R	K	D	G	E	W	.	.	.	R	F	P	P	L	A	A	E	Q	A	L	H	Y	L	S	Q	L	I	E	G	Y	R	E	G	M	S	A	.	.	P	L	L	V	L	P	E	S	G	G	A	W	L	K
Query Conservation		.	.	.	.	.	.	.	.	.	.																									.	.	.																												.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																									.	.	.																												.	.
Template Conservation
Template Sequence		L	S	T	K	P	D	R	T	L	F	A	H	V	A	L	C	A	I	G	R	R	L	G	T	I	V	T	Y	D	T	S	L	D	A	A	I	A	P	F	R	H	L	D	P	A	T	R	E	G	V	R	R	E	A	A	E	A	E	L	A	L	A	G	R	T	W	A	P	G	V	E	A	L	T	H	T	L	L	S	T
Template Known Secondary structure								T	T									S	S		S	S	T	T		B					S	S						T	T	B		S																				T	T	T
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		1048	.	1050	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	C	Y	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	N	N	M
Template Known Secondary structure				T	T	T
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions