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Job DescriptionP07648
Confidence100.00%DateThu Jan 5 11:00:26 GMT 2012
Rank6Aligned Residues588
% Identity15%Templatec2is6B_
PDB info PDB header:hydrolase/dnaChain: B: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50........ .60.........70.........80.....
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Query Sequence  SNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFGIAA. NIDFPLPASFIWDMFVRVLPEIPKESA
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Template Sequence  SGKTRVLVHRIAWLMSVENC. SP. YSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQD
Template Known Secondary structure  SSTS

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G.GGSSTTTTTT
TT

TT
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   33......40.........50.. .. .....60.........70.........80.........90.........100.........110
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  FNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAWQ
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Template Sequence  FQI. . . . . . . . . . . . . LDSEDQLRLLKRLIKAMNLDEKQW. PPRQAMWYINSQK. . . . . . . . . . DEGLRPHHINPVEQTW
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TT

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   111.. ......120.........130....... ..140.........150 .........160......
 
   166...170.........180.........190.........200....... ..210.........220.........230.........240..
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Query Sequence  APLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGL. . . PSRVFICGISALPPVYLQALQALGKHIEIHLLFTN
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Template Sequence  QKVYQAYQEACDRAG. . LVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGD
Template Known Secondary structure  T..


SSGGG

TTT

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   171........180..... ....190.........200.........210.........220.........230.........240........
 
   243......250.........260.........270.........280.........290.........300.........310.........320..
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Query Sequence  PCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE
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Template Conservation    
 
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Template Sequence  DDQSIY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GWRGAQVENIQRFLNDFPGAET
Template Known Secondary structure  GGG


....................................................GGGT

TSTT
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   249250.... .....260.........270......
 
   323......330.........340.........350.........360.........370.........380.........390.........400..
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Query Sequence  LDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPT
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Template Sequence  IRLEQNYRSTSNILSAANALIENNNGR. . . . . . . . . . LGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDN. . G
Template Known Secondary structure 

B

SS
TTSTT
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   277..280.........290.........300... ......310.........320.........330.........340... .
 
   403......410.........420.........430.........440.........450.........460.........470.........480..
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Query Sequence  LTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAAR
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Template Sequence  GALAECAILYRS. NAQSRVLEEALLQAS. . . . MPYRIYGGMRFFERQEIKDALSYLRLIVNRNDDAAFERVVNTPTR. . .
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GGGSS.GGGTT....


SSS
GGGS
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   345....350...... ...360.........370. ........380.........390.........400.........410......
 
   483......490.........500.........510.........520.........530.........540.........550.........560..
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Query Sequence  FDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVG
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Template Sequence  . GIGDRTLDVVRQTSRDRQLT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LWQACRELLQEKALAGRAAS
Template Known Secondary structure  .S

TS
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   417..420.........430...... ...440.........450......
 
   563......570.........580.........590.........600.........610.........620.........630.........640..
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Query Sequence  HLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA
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Template Sequence  ALQRFMELIDALAQETA. DMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSEDLM. . . . PLQAFLS
Template Known Secondary structure  TT.TS
TSS
TTTS



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   457..460.........470... ......480.........490.........500.........510.........520.... .....530.
 
   643......650...... ...660.........670.........680.........690.........700.........710.........720.
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Query Sequence  QRLDQERISQRFLA. GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALI
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Template Sequence  HAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQM. . . . . . . . . . . . SLDEGGRLEEERRLAYVGVT
Template Known Secondary structure  TGGG
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BTBBTTBGG............GGSSTTT
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   537..540.........550.........560.........570.........580.... .....590.........600....
 
   722.......730.........740... ......750.
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Query Sequence  SAQQKLYISYIGRSIQDNSERF. . PSVLVQEL
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Template Sequence  RAMQKLTLTYAETRRLYGKEVYHRPSRFIGEL
Template Known Secondary structure  TS
TT


B
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   605....610.........620.........630......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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