Job Description P07648 Confidence 91.54% Date Thu Jan 5 11:00:26 GMT 2012 Rank 21 Aligned Residues 109 % Identity 22% Template c2gk7A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: structural and functional insights into the human upf1 helicase core Resolution 2.80 Å

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		638	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	E	L	A	Q	R	L	D	Q	E	R	I	S	Q	R	F	L	A	G	P	V	N	I	C	T	L	M	P	M	R	S	I	P	F	K	V	V	C	L	L	G	M	N	D	G	V	Y	P	R	Q	L	A	P	L	G	F	D	L	M	S	Q	K	P	K	R	G	D	R	S	R	R	D	D	D	R	Y	L	F	L
Query Conservation
Alig confidence																																																	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	S	Y	L	V	Q	Y	M	Q	F	S	G	S	L	H	T	K	L	Y	Q	E	V	E	I	A	S	V	D	A	F	Q	G	R	E	K	D	F	I	I	L	S	C	V	R	A	N	E	.	.	.	.	H	Q	G	I	G	F	L	N	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	R	L	N
Template Known Secondary structure												S		S	S						T	T	S					S	G	G	G	T	T														S		.	.	.	.	S				S	T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.					.	.	.	850	.	.	.	.	.																.	.	.	.	860
		718	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	I	S	A	Q	Q	K	L	Y	I	S	Y	I	G	R	S	I	Q	D	N	S	E	R	F	P	S	V	L	V	Q	E	L	I	D	Y	I	G	Q	S	H	Y	L	P	G	D	E	A	L	N	C	D	E
Query Conservation
Alig confidence														.	.			.	.	.	.
Template Conservation														.	.			.	.	.	.
Template Sequence		V	A	L	T	R	A	R	Y	G	V	I	I	.	.	V	G	.	.	.	.	N	P	K	A	L	S	K	Q	P	L	W	N	H	L	L	N	Y	Y	K	E	Q	K	V	L	V	E	G	P	L	N	N	L	R	E
Template Known Secondary structure					T	S								.	.			.	.	.	.							S	S													T	T			B	B	T	T	T	T	B
Template Predicted Secondary structure														.	.			.	.	.	.
Template SS confidence
		861	.	.	.	.	.	.	.	.	870	.	.			.	.					.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions