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Job DescriptionP07648
Confidence100.00%DateThu Jan 5 11:00:26 GMT 2012
Rank7Aligned Residues595
% Identity14%Templatec1uaaB_
PDB info PDB header:hydrolase/dnaChain: B: PDB Molecule:protein (atp-dependent dna helicase rep.); PDBTitle: e. coli rep helicase/dna complex
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50..... ....60.........70.........80....
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Query Sequence  SNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKFG. . IAANIDFPLPASFIWDMFVRVLPEIPKES
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Template Sequence  SGKTRVITNKIAHLIRGCGY. QA. RHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKA
Template Known Secondary structure  S


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G.GGSSS
TTTT
S


TTSS


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   26...30.........40..... .. ..50.........60.........70.........80.........90.........100...
 
   85....90.........100.........110.........120.........130.........140.........150.........160....
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Query Sequence  AFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGEAQAW
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Template Conservation      .............                      ..                            .....      
Template Sequence  NFSL. . . . . . . . . . . . . FDDTDQLALLKELTEGLIEDDK. . VLLQQLISTISNWKNDLKTPSQAAASAI. . . . . GERDRI
Template Known Secondary structure 


B.............
TTTSSSS
S
..TT

TTT

.....S
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   104... ..110.........120......... 130.........140.........150....... ..160...
 
   165....170.........180. ........190.........200.........210.........220.........230.........240...
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Query Sequence  QAPLWKALVEYTHQLGQ. PRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNP
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Template Sequence  FAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDD
Template Known Secondary structure  T
B
TTT
TTSSS
GGG
BSSSS



G
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   164.....170.........180.........190.........200.........210.........220.........230.........240...
 
   244.....250.........260.........270.........280.........290.........300.........310.........320...
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Query Sequence  CRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQEL
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Template Conservation   
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Template Sequence  DQSIY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SWRGARPQNLVLLSQDFPALKVI
Template Known Secondary structure  GG

G....................................................GGGTB
TTS
TT
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   244.... .250.........260.........270.
 
   324.....330.........340.........350.........360.........370.........380.........390.........400...
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Query Sequence  DAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTL
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Template Conservation   
    
    
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Template Sequence  KLEQNYRSSGRILKAANILIANNPHV. . . . . . . . . . FEKRLFSELGYGAELKVLSANNEEHEAERVTGELIA. HHFVNKT
Template Known Secondary structure 
SSS
GGGS

S..........S



SS




.T
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   272.......280.........290....... ..300.........310.........320.........330... ......340
 
   404.....410.........420.........430.........440.........450.........460.........470.........480...
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Query Sequence  TPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARF
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Template Sequence  QYKDYAILYRGNH. QSRVFEKFLMQNR. . . . IPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKR. . . .
Template Known Secondary structure 
GGGSSS.TT....



SS

GGGS
TT
TTTTT
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   341........350... ......360...... ...370.........380.........390.........400.........410.
 
   484.....490.........500.........510.........520.........530.........540.........550.........560...
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Query Sequence  DITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGH
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Template Conservation           
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Template Sequence  EIGPATLKKLGEWAMTRNKS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . MFTASFDMGLSQTLSGRGYEA
Template Known Secondary structure 


TTS
.......................................TT
TTTTTTS
TTSTTT
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   412.......420.........430. ........440.........450..
 
   564.....570.........580.........590.........600.........610.........620.........630.........640...
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Query Sequence  LASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQ
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Template Conservation                                                         
                        
Template Sequence  LTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVT
Template Known Secondary structure  TT
TSSS

SSS



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   453......460.........470.........480.........490.........500.........510.........520.........530..
 
   644.....650.........660.........670.........680.........690.........700.........710.........720...
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Query Sequence  RLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISA
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Template Sequence  RFTLRDEEL. . . . DQVQLMTLHASKGLEFPYVYMVGMEEGFLPH. . . . . . . . . . . . . QSSIDEDNIDEERRLAYVGITRA
Template Known Secondary structure  TT



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TT




BTTTTTT.............TTS

T
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   533......540. ........550.........560.........570.. .......580.........590.....
 
   724.....730.........740... ......750.
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Query Sequence  QQKLYISYIGRSIQDNSERF. . PSVLVQEL
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Template Conservation 
  
 
                 
 

 

Template Sequence  QKELTFTLCKERRQYGELVRPEPSRFLLEL
Template Known Secondary structure  SSSS


B
S
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   604.....610.........620.........630...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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