Return to main results Retrieve Phyre Job Id

Job DescriptionP21888
Confidence100.00%DateThu Jan 5 11:38:38 GMT 2012
Rank15Aligned Residues292
% Identity24%Templated1ffya3
SCOP infoAdenine nucleotide alpha hydrolase-like Nucleotidylyl transferase Class I aminoacyl-tRNA synthetases (RS), catalytic domain
Resolution2.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.........70.........80......
Predicted Secondary structure 



























............
Query SS confidence 



































































. . . . . . . . . . . .
Query Sequence  HAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFV. . . . . . . . . . . .
Query Conservation      
  
 



  
  





  
  




 

  
  
  
  
 
 
 

   
   
    ............
Alig confidence 



































































............
Template Conservation      
     

  

 




       


 
  
  
  
    
 
  
 

   
                    
Template Sequence  GNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCK
Template Known Secondary structure  TS
B





BSSS


TTT
B




B

ST

STTT
Template Predicted Secondary structure 































Template SS confidence 















































































   46...50.........60.........70.........80.........90.........100.........110.........120.....
 
   87..90.........100.........110..... ....120.........130.........140.........150.........160...
Predicted Secondary structure 








...






















Query SS confidence 




























. . .















































Query Sequence  AMVDRMIAEMHKDFDALNILRPDMEPRAT. . . HHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQL
Query Conservation 
               
 
   
   
 
...
    
      
   
  
       

        
 
        
Alig confidence 




























...



























..






..








Template Conservation                  


  
      
        
   
  
   
 

        ..     
 ..


      
Template Sequence  EFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYW. . SPSSESS. . LAEAEIEYP
Template Known Secondary structure  TTT

S
TTS
TTSTT
..TTTT..

GGG

Template Predicted Secondary structure 






















..






..








Template SS confidence 















































































   126...130.........140.........150.........160.........170.........180..... ....190.. .......200.
 
   164.....170.........180.. .......190.........200....
Predicted Secondary structure 


















.............................





















..........
Query SS confidence 


















. . . . . . . . . . . . . . . . . . . . . . . . . . . . .





















. . . . . . . . . .
Query Sequence  QAGARVDVVDDKRNPMDFV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . LWKMSKEGEPSWPSPWGAGRPG. . . . . . . . . .
Query Conservation             
    

 .............................
 
            

 
 
 ..........
Alig confidence 


















.............................





















..........
Template Conservation                 


                    
                  


   

 


    
      
Template Sequence  HDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIM
Template Known Secondary structure  TTT

B

TSSS



S
SSS
B



TTS

Template Predicted Secondary structure 







































Template SS confidence 















































































   396...400.........410.........420.........430.........440.........450.........460.........470.....
 
   205....210...... ...220.......
Predicted Secondary structure  .........................................................



Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .











. . . . .










Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . WHIECSAMNCKQ. . . . . LGNHFDIHGGG
Query Conservation  ....................................................
     
     .....     


  
Alig confidence  ....................................................











.....










Template Conservation                                                 
  
 
  
                
 

   
Template Sequence  TKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEG
Template Known Secondary structure 

TS
SSTT


SS
TTS





TTTTTSTT

SSBS
Template Predicted Secondary structure 










































Template SS confidence 















































































   476...480.........490.........500.........510.........520.........530.........540.........550.....
 
   228.230.........240.........250.........260 .........270.........280.........290.........300......
Predicted Secondary structure 













.



























Query SS confidence 
































.













































Query Sequence  SDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMV. MVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSE
Query Conservation   
    
     
   
           
   
.   
 




 

 
   


     
  

 

         

 
Alig confidence 
































.













































Template Conservation   
               
    
   
   
 

   
 




 

 
    

  



 

  
       
  

 
Template Sequence  SDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISD
Template Known Secondary structure  GGGGTTSS
SBS


TTS



SSSS



T
TS
TTS


Template Predicted Secondary structure 
































Template SS confidence 















































































   556...560.........570.........580.........590.........600.........610.........620.........630.....
 
   307..310....
Predicted Secondary structure 
Query SS confidence 







Query Sequence  ENLKQARA
Query Conservation 
 
     
Alig confidence 







Template Conservation    
     
Template Sequence  EILKQTSD
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 







   636...640...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions