Job Description P21888 Confidence 100.00% Date Thu Jan 5 11:38:38 GMT 2012 Rank 4 Aligned Residues 382 % Identity 56% Template c3tqoA_ PDB info PDB header:ligase Chain: A: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: structure of the cysteinyl-trna synthetase (cyss) from coxiella2 burnetii. Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	I	F	N	T	L	T	R	Q	K	E	E	F	K	P	I	H	A	G	E	V	G	M	Y	V	C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	I	F	N	S	L	T	K	Q	K	E	I	F	K	P	I	E	S	G	K	V	K	L	Y	V	C	G	X	T	V	Y	D	Y	X	H	I	G	H	G	R	S	W	I	I	F	D	X	V	V	R	Y	L	R	X	R	G	Y	E	V	T	F	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	G	E	N
Template Known Secondary structure							T	T	T	T								S	S	T	T										B	T	T	S			B																				T	T									B	B													T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K	D	F	D	A	L	N	I	L	R	P	D	M	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	S	P	A	A	L	A	E	R	F	I	Q	I	L	H	E	D	E	K	A	L	R	V	L	S	P	D	Q	E	P	R	A	T	Q	Y	V	P	E	I	I	K	L	I	Q	K	L	L	D	N	Q	Y	A	Y	T	G	Q	N	G	D	V	F	F	D	V	R	R	F	K	D	Y	G	K	L	S	H	R	H	L	D
Template Known Secondary structure		T	S																					T					S	B			B	G	G	G																T	S					T	T	S						T	T	T		T	T	T	T	T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	Q	A	G	A	R	V	D	V	V	D	D	K	R	N	P	M	D	F	V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	W	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D	L	M	F	P	H	H	E	N	E	I	A	Q
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	.	.	.	.	.	.	.	.	.	.	.	.	K	R	D	P	L	D	F	V	L	W	K	K	A	K	P	G	E	P	K	W	D	S	P	W	G	E	G	R	P	G	W	H	I	E	C	S	A	X	S	S	S	I	L	G	Q	P	F	D	I	H	G	G	G	L	D	L	K	F	P	H	H	E	N	E	I	A	Q
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.		S	S	T	T										T	T	S			B			T	T		S																			S	S								G	G	G	T	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		175													.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	C	A	H	D	G	Q	Y	V	N	Y	W	M	H	S	G	M	V	M	V	D	R	E	K	M	S	K	S	L	G	N	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R	Y	F	L	M	S	G	H	Y	R	S	Q	L	N	Y	S	E	E	N	L	K	Q	A	R	A	A	L	E	R	L	Y	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	A	G	E	E	K	P	F	V	K	L	W	X	H	A	G	L	L	E	I	N	K	E	K	X	S	K	S	L	G	N	I	I	S	I	R	E	A	L	K	E	S	D	V	E	V	L	R	Y	F	L	L	S	G	H	Y	R	N	P	L	S	Y	S	K	E	N	L	E	N	G	R	L	A	L	E	R	F	Y	L
Template Known Secondary structure							S	S															T	T					T	T	T	T				B								S												S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.		.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		A	L	R	G	T	D	K	T	V	A	P	A	G	G	E	A	F	E	A	R	F	I	E	A	M	D	D	D	F	N	T	P	E	A	Y	S	V	L	F	D	M	A	R	E	V	N	R	L	K	A	E	.	D	M	A	A	A	N	A	M	A	S	H	L	R	K	L	S	A	V	L	G	L	L	E	Q	E	P	E	A
Query Conservation																																																					.
Alig confidence								.	.	.	.	.	.	.																																							.
Template Conservation								.	.	.	.	.	.	.
Template Sequence		A	L	R	G	L	P	.	.	.	.	.	.	.	V	S	S	Y	T	D	R	F	Y	E	A	X	D	D	D	F	N	T	P	I	A	F	A	L	L	F	E	X	V	R	E	I	N	R	F	R	D	N	N	Q	I	E	K	A	A	V	L	A	A	E	L	K	C	L	G	N	I	F	G	L	L	Q	Y	S	P	E	Q
Template Known Secondary structure				T	T			.	.	.	.	.	.	.													T	B	T																							T	T																	G	G	G	T		S		S
Template Predicted Secondary structure								.	.	.	.	.	.	.
Template SS confidence
		323	.	.	.	.	.								.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		401	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		402	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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