Job Description P21888 Confidence 98.19% Date Thu Jan 5 11:38:38 GMT 2012 Rank 71 Aligned Residues 304 % Identity 18% Template c3sz3A_ PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from vibrio cholerae2 with an endogenous tryptophan Resolution 1.50 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	G	M	Y	V	C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K	D	F	D
Query Conservation
Alig confidence								.													.	.	.														.								.	.						.	.	.	.	.	.														.
Template Conservation								.													.	.	.														.								.	.						.	.	.	.	.	.														.
Template Sequence		K	P	I	V	L	S	.	G	V	Q	P	S	G	E	L	S	I	G	N	.	.	.	Y	L	G	A	L	R	Q	W	Q	Q	M	Q	D	.	D	Y	D	C	Q	Y	C	.	.	V	V	D	L	H	.	.	.	.	.	.	A	I	T	V	R	Q	D	P	Q	A	L	H	E	.	A	T	L	D	A	L	A	I	C	L
Template Known Secondary structure		S						.				S	S	S			B				.	.	.				T	G	G	G							.		S						.	.						.	.	.	.	.	.		T	T	S										.
Template Predicted Secondary structure								.													.	.	.														.								.	.						.	.	.	.	.	.														.
Template SS confidence
		3	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20				.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40			.	.	.	.	.							.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	N	I	L	R	P	D	M	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R	V	D	V	V	D	D	K	R	N	P	M	D	F
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	G	V	D	P	K	K	S	T	L	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	V	L	N	C	Y	.	.	.	.	.	.	.	.	.	T	Q	M	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	N	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T			T	T	T	S					G	G	G		T											T	T	.	.	.	.	.	.	.	.	.	S							T												G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.										.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.											.	.	.	.	.	250	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	W	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D	L	M	F	P	H	H	E	N	E	I	A	Q	S	T	C	.	.	.	.	.	.	.	.	.	.	A	H	D	G	Q	Y	V
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.												.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	G	L	F	G	Y	P	V	L	M	A	A	D	I	L	L	Y	G	A	H	Q	V	P	V	G	S	D	Q	K	Q	.	H	L	E	L	A	R	D	I	A	T	R	F	N	N	I	Y	S	P	E	Q	P	I	F	T	I	P	E	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T	T	T		S						G	G	G			.																		S	S	S		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Template SS confidence
																						122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		252	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270				.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.											.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure													.	.	.									.	.	.																												.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.									.	.	.																												.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Y	W	M	H	S	G	M	V	M	V	.	.	.	D	R	E	K	M	S	K	S	.	.	.	L	G	N	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R	Y	F	L	M	S	G	H	.	.	.	.	.	.	.	.	.	.	Y	R	S	Q	L	N	Y	S	E	E	N	L	K	Q	A	R	A	A
Query Conservation													.	.	.									.	.	.																												.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.									.	.	.										.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.
Template Sequence		Y	I	P	T	V	N	A	R	V	M	S	L	Q	D	A	T	K	K	M	S	K	S	D	D	N	R	K	N	V	I	T	L	L	E	.	.	.	.	.	D	P	K	S	I	I	K	K	I	N	K	A	Q	T	D	A	E	T	P	P	R	I	A	Y	D	V	E	N	K	A	G	I	A	N	L	M	G	L	Y	S	A
Template Known Secondary structure					S								T	T								T	T		S		G	G	G			B	T	T		.	.	.	.	.											T							S	S							T	T	T
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.						.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		316	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.
Predicted Secondary structure				.	.																																																																			.
Query SS confidence				.	.																																																																			.
Query Sequence		L	E	.	.	R	L	Y	T	A	L	R	G	T	D	K	T	V	A	P	A	G	G	E	A	F	E	A	R	F	I	E	A	M	D	D	D	F	N	T	P	E	A	Y	S	V	L	F	D	M	A	R	E	V	N	R	L	K	A	E	D	M	A	A	A	N	A	M	A	S	H	.	L	R	K	L	S	A	V	L	G
Query Conservation				.	.																																																																			.
Alig confidence				.	.																																						.	.																												.
Template Conservation																																											.	.
Template Sequence		A	T	G	K	T	F	A	E	I	E	A	Q	Y	A	G	V	E	M	Y	G	P	F	K	K	D	V	G	E	A	V	V	A	M	L	E	P	V	Q	A	E	Y	.	.	Q	R	I	R	N	D	R	E	Y	L	N	S	V	M	R	D	G	A	E	K	A	S	A	K	A	L	Q	T	L	K	K	V	Y	A	A	V	G
Template Known Secondary structure														T	T	T				S																							.	.					T																																T
Template Predicted Secondary structure																																											.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		393	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		334	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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