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Job DescriptionP21888
Confidence100.00%DateThu Jan 5 11:38:38 GMT 2012
Rank2Aligned Residues418
% Identity33%Templatec3sp1B_
PDB info PDB header:ligaseChain: B: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: crystal structure of cysteinyl-trna synthetase (cyss) from borrelia2 burgdorferi
Resolution2.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANE
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Template Sequence  ILKLYNTRTKDFSELTN. . FENVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGH. . . . . . . .
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TTTT


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   2.......10........ .20.........30.........40.........50.........60.........70.
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  NGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDL
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Template Sequence  . GLTVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFS. NGNVYFDTSCFKSYGEMAGIKF
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TT



SGGG
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GGG
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   91........100.........110.........120.........130.........140...... ...150.........160........
 
   161........170.........180..... ....190.........200.........210.........220.........230.......
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Query Sequence  DQLQAGARVDVVDDKRNPMDFVLWK. . . MSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHEN
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Template Sequence  . . . . . . . . . . . . . . KRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIGVHHIN
Template Known Secondary structure  ..............SSSTT

S


TT


B

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GGGTTT
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   184.....190.........200.........210.........220.........230.........240.........
 
   238.240.........250.........260.........270.........280.........290.........300.........310.......
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Query Sequence  EIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALE
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Template Sequence  EIAIAECFLNKKWCDVFVHGEFLIMDYNKMSFITVKDL. . . . EDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIARE
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SSSSB




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   250.........260.........270.........280....... ..290.........300.........310.........320.....
 
   318.320.........330.. .......340.........350.........360.........370.........380..
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Query Sequence  RLYTALRGTDKTVAP. . . . . . . . . . . . . . . AGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMAS
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Template Sequence  NLINKLSYFYESLDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDNLSFVSKLRLAFIFDE
Template Known Secondary structure  T

TTTS
TTS
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TTS
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   331........340.........350.........360.........370.........380.........390.........400.........410
 
   383......390.........400.........410.........420.........430.........440.........450.........460
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Query Sequence  HLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRR
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Template Sequence  IM. . . . . . . . . SLNLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDFFAKKGFVLVD. . . GTKVKR
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TS




TT
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   411. .......420.........430.........440.........450.........460.........470 ......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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