Job Description P21888 Confidence 100.00% Date Thu Jan 5 11:38:38 GMT 2012 Rank 2 Aligned Residues 418 % Identity 33% Template c3sp1B_ PDB info PDB header:ligase Chain: B: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: crystal structure of cysteinyl-trna synthetase (cyss) from borrelia2 burgdorferi Resolution 2.55 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	K	I	F	N	T	L	T	R	Q	K	E	E	F	K	P	I	H	A	G	E	V	G	M	Y	V	C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E
Query Conservation
Alig confidence																			.	.																																																						.	.	.	.	.	.	.	.
Template Conservation																			.	.																																																						.	.	.	.	.	.	.	.
Template Sequence		I	L	K	L	Y	N	T	R	T	K	D	F	S	E	L	T	N	.	.	F	E	N	V	K	V	Y	A	C	G	P	T	V	Y	N	Y	A	H	I	G	N	F	R	T	Y	I	F	G	D	L	L	I	K	T	L	R	F	L	G	Y	K	V	N	Y	A	M	N	I	T	D	I	G	H	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	T	T								.	.		S										B	S	S	S																							T	T										B		S			.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.																																																						.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K	D	F	D	A	L	N	I	L	R	P	D	M	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L
Query Conservation
Alig confidence		.																																																									.
Template Conservation		.																																																									.
Template Sequence		.	G	L	T	V	Y	E	I	S	E	F	F	T	E	A	F	F	N	D	C	R	K	L	N	I	V	Y	P	D	K	V	L	V	A	S	K	H	I	P	I	M	I	E	V	V	K	I	L	E	E	K	K	I	T	Y	F	S	.	N	G	N	V	Y	F	D	T	S	C	F	K	S	Y	G	E	M	A	G	I	K	F
Template Known Secondary structure		.																						T	T					S					G	G	G															T	T						.	T	T						G	G	G		T	T	T	T	G	G	G
Template Predicted Secondary structure		.																																																									.
Template SS confidence
			91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		D	Q	L	Q	A	G	A	R	V	D	V	V	D	D	K	R	N	P	M	D	F	V	L	W	K	.	.	.	M	S	K	E	G	E	P	S	W	P	S	P	W	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D	L	M	F	P	H	H	E	N
Query Conservation																											.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	N	K	T	D	F	V	L	W	F	T	N	S	K	F	K	D	Q	E	M	K	W	D	S	P	W	G	F	G	Y	P	S	W	H	L	E	C	A	A	M	N	L	E	Y	F	K	D	A	L	D	I	H	L	G	G	V	D	H	I	G	V	H	H	I	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	T	T									S				T	T				B			T	T		S																		T	T									G	G	G	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	A	Q	S	T	C	A	H	D	G	Q	Y	V	N	Y	W	M	H	S	G	M	V	M	V	D	R	E	K	M	S	K	S	L	G	N	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R	Y	F	L	M	S	G	H	Y	R	S	Q	L	N	Y	S	E	E	N	L	K	Q	A	R	A	A	L	E
Query Conservation
Alig confidence																																								.	.	.	.
Template Conservation																																								.	.	.	.
Template Sequence		E	I	A	I	A	E	C	F	L	N	K	K	W	C	D	V	F	V	H	G	E	F	L	I	M	D	Y	N	K	M	S	F	I	T	V	K	D	L	.	.	.	.	E	D	Q	N	F	S	P	L	D	F	R	Y	L	C	L	T	S	H	Y	R	N	Q	L	K	F	S	L	D	N	L	Q	A	S	K	I	A	R	E
Template Known Secondary structure											T	S				S										S	S	S	S	B										.	.	.	.			T	T												T	S		T	T	S
Template Predicted Secondary structure																																								.	.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.					.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.																.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	Y	T	A	L	R	G	T	D	K	T	V	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	G	E	A	F	E	A	R	F	I	E	A	M	D	D	D	F	N	T	P	E	A	Y	S	V	L	F	D	M	A	R	E	V	N	R	L	K	A	E	D	M	A	A	A	N	A	M	A	S
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	L	I	N	K	L	S	Y	F	Y	E	S	L	D	P	V	D	L	N	T	L	N	K	D	L	K	N	F	G	F	S	V	E	K	E	Y	Y	D	S	F	V	E	K	I	S	F	D	L	N	V	A	Q	G	L	A	L	L	W	E	I	I	K	S	D	N	L	S	F	V	S	K	L	R	L	A	F	I	F	D	E
Template Known Secondary structure													T								T	T	T	S		T	T	S		S	S																B	T																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	R	K	L	S	A	V	L	G	L	L	E	Q	E	P	E	A	F	L	Q	S	G	A	Q	A	D	D	S	E	V	A	E	I	E	A	L	I	Q	Q	R	L	D	A	R	K	A	K	D	W	A	A	A	D	A	A	R	D	R	L	N	E	M	G	I	V	L	E	D	G	P	Q	G	T	T	W	R	R
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.																																																											.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.																																																											.	.	.
Template Sequence		I	M	.	.	.	.	.	.	.	.	.	S	L	N	L	R	E	E	I	L	K	N	L	Q	N	H	D	V	V	I	D	E	N	M	K	A	L	I	E	E	R	R	I	A	K	C	E	K	N	F	K	R	A	D	E	I	R	D	F	F	A	K	K	G	F	V	L	V	D	.	.	.	G	T	K	V	K	R
Template Known Secondary structure				.	.	.	.	.	.	.	.	.														T	S																					T	T															T	T						.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.																																																											.	.	.
Template SS confidence
		411	.										.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470				.	.	.	.	.	.