Job Description P21888 Confidence 98.76% Date Thu Jan 5 11:38:38 GMT 2012 Rank 53 Aligned Residues 273 % Identity 16% Template c3jxeB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of pyrococcus horikoshii tryptophanyl-trna2 synthetase in complex with trpamp Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	G	E	V	G	M	Y	V	C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K
Query Conservation
Alig confidence											.													.	.	.																						.	.					.	.	.	.														.
Template Conservation											.													.	.	.																						.	.					.	.	.	.														.
Template Sequence		E	G	R	G	F	F	L	Y	T	.	G	R	G	P	S	G	P	M	H	I	G	H	.	.	.	I	I	P	F	F	A	T	K	W	L	Q	E	K	F	G	V	N	L	Y	I	Q	.	.	I	T	D	D	.	.	.	.	E	K	F	L	F	K	E	N	L	T	F	D	D	.	T	K	R	W	A	Y	D	N	I	L
Template Known Secondary structure		T	T								.					S	S			B				.	.	.																						.	.					.	.	.	.							S	S						.
Template Predicted Secondary structure											.													.	.	.																						.	.					.	.	.	.														.
Template SS confidence
		70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90				.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	D	A	L	N	I	L	R	P	D	M	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R	V	D	V	V	D	D	K	R	N	P
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	I	I	A	V	G	F	D	P	D	K	T	F	I	F	Q	N	S	E	F	T	K	I	Y	E	M	A	I	P	I	A	K	.	.	.	.	.	.	.	.	.	.	.	.	K	I	N	F	S	M	A	K	A	V	F	G	F	T	E	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T				T	T	S						T	T	T	S	T												.	.	.	.	.	.	.	.	.	.	.	.		S													T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170													.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		M	D	F	V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	W	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	.	I	H	G	G	G	S	D	L	M	F	P	H	H	E	N	E	I	A	Q	S	T	C	A	H	D	G	Q	Y	V	N	Y	W	M	H	S
Query Conservation																																														.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.									.																				.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.																				.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	I	G	M	I	F	F	P	A	I	Q	I	A	P	T	F	F	E	R	K	R	C	L	I	P	A	A	I	D	Q	.	D	P	Y	W	R	L	Q	R	D	F	A	E	S	L	G	Y	Y	K	T	.	.	A	A	L	H	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													G	G	G	G	S	S	S	S								G	G	G	.											T	T	T	T	T	S				.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.																				.	.
Template SS confidence
																									188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.
		258	.	260	.		.	.	.			.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure						.				.	.										.
Query SS confidence						.				.	.										.
Query Sequence		G	M	V	M	.	V	D	R	.	.	E	K	M	S	K	S	L	G	N	.	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R	Y	F	L	M	S	G	H	Y	R	S	Q	L	N	Y	S	E	E	N	L	K	Q	A	R	A	A	L	E	R	L	Y	T	A	L	R	G	T	D	K	T	V	A	P	A
Query Conservation						.				.	.										.
Alig confidence						.				.	.										.							.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	F	V	P	S	L	T	S	L	S	G	K	M	S	A	S	K	P	E	T	A	I	Y	L	T	D	.	.	.	.	.	S	P	E	D	V	E	K	K	V	W	K	F	T	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	V	V	F	K	W	L	E	I	F	F	E	E
Template Known Secondary structure							S	S		S	S	S				T	T	S	G	G	G			B	T	T		.	.	.	.	.											T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T
Template Predicted Secondary structure																												.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.						.	.	270	.	.	.	.	.	.	.	.	.	280	.	.																						.	.	.	.	.	.	.	290	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	E	A	F	E	A	R	F	I	E	A	M	D	D	D	F	N	T	P	E	A	Y	S	V	L	F	D	M	A	R	E	V	N	R	L	K	A	E	D	M	A	A	A	N	A	M	A	S	H	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	D	K	K	L	K	E	R	Y	Y	A	C	K	N	G	E	L	T	C	G	E	C	K	R	Y	L	I	S	K	I	Q	E	F	L	K	E	H	Q	R	R	R	K	K	A	E	K	L	V	E	K	F	K
Template Known Secondary structure															T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions