Job Description P21888 Confidence 98.66% Date Thu Jan 5 11:38:38 GMT 2012 Rank 59 Aligned Residues 198 % Identity 13% Template c3hzrD_ PDB info PDB header:ligase Chain: D: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase homolog from entamoeba histolytica Resolution 3.00 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	G	E	V	G	M	Y	V	C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K
Query Conservation
Alig confidence											.																			.	.	.																.	.				.	.	.	.	.														.
Template Conservation											.																			.	.	.																.	.				.	.	.	.	.														.
Template Sequence		A	K	K	P	T	F	I	F	I	.	Q	K	Y	P	Q	K	E	V	A	L	E	E	Y	I	T	L	E	F	.	.	.	A	R	Y	L	Q	D	A	F	N	I	Q	V	I	I	Q	.	.	I	L	D	.	.	.	.	.	D	I	K	V	L	N	R	E	A	T	I	N	E	.	A	S	K	M	S	N	D	L	M	K
Template Known Secondary structure		T	T								.						S	S		B	G	G	G							.	.	.																.	.				.	.	.	.	.						T	T	S						.
Template Predicted Secondary structure											.																			.	.	.																.	.				.	.	.	.	.														.
Template SS confidence
		74	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.						.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.
		99	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		D	F	D	A	L	N	I	L	R	P	.	D	M	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R	V	D	V	V	D	D	K	R	N
Query Conservation												.
Alig confidence												.																							.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	I	L	A	F	G	F	N	E	D	K	T	F	I	Y	T	D	Y	Q	Y	F	G	K	M	Y	R	T	I	S	L	V	E	K	.	.	.	.	.	.	.	.	.	.	.	.	A	T	A	Y	N	V	V	Q	P	F	F	N	F	E	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T				G	G	G																							.	.	.	.	.	.	.	.	.	.	.	.								T	T	T	S				S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.													.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.										.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.
Query Sequence		P	M	D	F	V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	W	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	.	.	.	.	.	.	.	.	.	I	H	G	G	G	S	D	L	M	F	P	H	H	E	N	E	I	A	Q	S	T	C	A	H	D	G
Query Conservation																																															.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.											.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	I	G	K	L	A	S	P	S	I	M	T	A	S	M	F	S	Q	S	Y	S	H	F	F	S	S	P	A	R	C	L	V	L	D	S	I	K	N	V	Q	.	F	H	S	I	I	D	Q	I	A	T	T	L	N	F	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S														T	T	S	G	G	G		T	T	T		S	S										G	G	G			.													T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.
Template SS confidence
																									191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.		.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure															.				.								.
Query SS confidence															.				.								.
Query Sequence		Q	Y	V	N	Y	W	M	H	S	G	M	V	M	.	V	D	R	.	E	K	M	S	K	S	L	.	G	N	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R
Query Conservation															.				.								.
Alig confidence				.	.										.				.								.									.	.	.	.	.
Template Conservation				.	.																															.	.	.	.	.
Template Sequence		Q	P	.	.	T	V	L	F	H	K	M	V	P	L	L	S	G	V	T	K	F	D	I	P	S	D	H	N	S	I	L	L	S	D	.	.	.	.	.	N	A	K	Q	V	E
Template Known Secondary structure				.	.											T	T		T	T			S				T	T	T	S		B	T	T		.	.	.	.	.
Template Predicted Secondary structure				.	.																															.	.	.	.	.
Template SS confidence
		247	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.						.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions