Job Description P21888 Confidence 98.52% Date Thu Jan 5 11:38:38 GMT 2012 Rank 62 Aligned Residues 238 % Identity 15% Template c3focB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from giardia lamblia Resolution 2.09 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		H	A	G	E	V	G	M	Y	V	C	G	I	T	V	.	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H
Query Conservation																.
Alig confidence											.					.									.	.	.																						.	.					.	.	.	.														.
Template Conservation											.														.	.	.																						.	.					.	.	.	.														.
Template Sequence		K	G	H	P	I	Y	I	Y	T	.	G	R	G	P	S	S	G	A	L	H	L	G	H	.	.	.	L	L	P	F	I	F	T	K	Y	L	Q	D	A	F	K	C	Y	V	V	I	Q	.	.	I	T	D	D	.	.	.	.	E	K	F	L	R	N	R	S	L	S	Y	A	E	.	V	D	S	Y	T	R	E	N	I
Template Known Secondary structure		T	T								.						S	S			B				.	.	.															T							.	.					.	.	.	.							T	T						.
Template Predicted Secondary structure											.														.	.	.																						.	.					.	.	.	.														.
Template SS confidence
		66	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	F	D	A	L	N	I	L	R	P	D	M	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R	V	D	V	V	D	D	K	R	N
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	I	I	A	C	G	F	D	P	D	K	T	F	I	F	I	N	S	Q	Y	L	S	L	K	N	R	Y	R	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	L	V	D	R	M	L	P	I	S	Q	L	R	A	S	F	G	F	S	N	D	A	N	V	G	Y	A	A	F	P	P	K	Q	M
Template Known Secondary structure						T	T	T			G	G	G										T	T	S	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T														S	S							T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.																.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	D	F	V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	W	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D	L	M	F	P	H	H	E	N	E	I	A	Q	S	T	C	A	H	D	G	Q	Y	V	N	Y	W	M	H	S
Query Conservation
Alig confidence																																																									.																		.	.
Template Conservation																																																									.																		.	.
Template Sequence		L	P	V	Y	S	T	Y	F	D	G	L	P	F	T	R	V	P	L	P	V	G	A	V	L	S	P	V	H	V	V	E	E	L	F	P	D	S	K	R	Y	Q	K	A	M	C	L	I	A	S	G	I	E	Q	D	P	.	Y	F	R	L	A	R	D	L	A	P	R	M	G	H	P	K	N	.	.	A	Y	L	L	G
Template Known Secondary structure		G	G	G	S	G	G	G	G	T	T	S	G	G	G		S	B																		G	G	G	T	T	B											T	T	T			.									T	T	T	T	T	S				.	.
Template Predicted Secondary structure																																																									.																		.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.
		258	.	260	.		.	.	.			.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure						.				.	.										.
Query SS confidence						.				.	.										.
Query Sequence		G	M	V	M	.	V	D	R	.	.	E	K	M	S	K	S	L	G	N	.	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R
Query Conservation						.				.	.										.
Alig confidence						.				.	.										.							.	.	.	.	.
Template Conservation																												.	.	.	.	.
Template Sequence		K	F	L	P	G	L	Q	G	S	G	T	K	M	S	A	S	D	P	N	S	A	I	Y	L	T	D	.	.	.	.	.	T	P	A	Q	I	K
Template Known Secondary structure							T	T		T	T					S	S		G	G	G	S		B	T	T		.	.	.	.	.
Template Predicted Secondary structure																												.	.	.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.						.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions