Job Description P21888 Confidence 100.00% Date Thu Jan 5 11:38:38 GMT 2012 Rank 34 Aligned Residues 381 % Identity 14% Template c3afhA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase 2; PDBTitle: crystal structure of thermotoga maritima nondiscriminating glutamyl-2 trna synthetase in complex with a glutamyl-amp analog Resolution 2.00 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K	D	F	D	A	L	N	I	L	R
Query Conservation
Alig confidence																												.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	P	S	P	T	G	H	L	H	V	G	G	A	R	T	A	L	F	N	W	M	F	A	R	K	.	.	.	.	.	E	G	G	K	F	I	L	R	I	E	D	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	R	S	S	R	E	Y	E	Q	Q	I	L	E	S	L	R	W	C	G	L	D	W
Template Known Secondary structure							S	S	S		B																	.	.	.	.	.		T							B					.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T																T	T
Template Predicted Secondary structure																												.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.						.	.	.	.	.	60	.	.	.	.	.	.	.														.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		108	.	110	.	.										.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.
Query Sequence		P	D	M	E	P	.	.	.	.	.	.	.	.	.	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R	V	D	V	V	D	D	K	R	N	P
Query Conservation							.	.	.	.	.	.	.	.	.
Alig confidence		.					.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	D	E	G	P	D	I	G	G	D	F	G	P	Y	R	Q	S	E	R	L	E	I	Y	R	E	Y	A	E	K	L	V	E	D	K	R	A	Y	Y	V	V	Y	D	K	E	D	P	S	K	E	L	F	T	T	Y	E	Y	P	H	E	Y	K	E	K	G	H	P	V	T	I	K	F	K	V	L	P	G	K	T	S	F
Template Known Secondary structure		.	S	B	B	T	T	T	B		T	T				B	G	G	G															T	T	S								S	S	S	T	T	S						S	S								T	T											S	S
Template Predicted Secondary structure		.
Template SS confidence
			91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																.	.																																																				.	.
Query SS confidence																.	.																																																				.	.
Query Sequence		M	D	F	V	L	W	K	M	S	K	E	G	E	P	.	.	S	W	P	S	P	W	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D	L	M	F	P	H	H	E	N	E	I	A	Q	S	T	.	.	C	A	H	D	G	Q	Y	V	N	Y	W
Query Conservation																.	.																																																				.	.
Alig confidence																.	.																				.	.	.																.	.	.	.											.	.
Template Conservation																																					.	.	.																.	.	.	.
Template Sequence		E	D	L	L	K	G	Y	M	E	F	D	N	S	T	L	E	D	F	I	I	M	K	S	N	G	F	P	T	Y	N	F	A	V	V	V	.	.	.	D	D	H	L	M	R	I	S	H	V	F	R	G	E	D	.	.	.	.	H	L	S	N	T	P	K	Q	L	M	I	Y	E	A	F	G	W	E	A	P	V	F	M
Template Known Secondary structure				T	T	T							G	G	G	S								T	T	S		B									.	.	.					T	T		S						G	G	.	.	.	.	G	G	G	G												T
Template Predicted Secondary structure																																					.	.	.																.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		M	H	S	G	M	V	M	V	D	R	E	K	M	S	K	S	L	G	N	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R	Y	F	L	M	S	G	.	.	H	Y	R	S	Q	L	N	Y	S	E	E	N	L	K	Q	A	R	A	A	L	E	R	L	Y	T	A	L	R	G	T	D	K	T	V	A	P
Query Conservation																																												.	.
Alig confidence																																												.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.
Template Sequence		H	I	P	L	I	L	G	S	D	R	T	P	L	S	K	R	H	G	A	T	S	V	E	H	F	R	R	E	G	I	L	S	R	A	L	M	N	Y	L	A	L	L	G	W	R	V	E	G	D	E	I	F	T	I	E	E	K	L	Q	S	F	D	.	.	.	.	.	.	.	.	.	P	K	D	I	S	N	K	G	V
Template Known Secondary structure									T	T	S	S	B			T	T	T	S			B								T													T	T				S	S		S								G	G	G			.	.	.	.	.	.	.	.	.	G	G	G	S		S	S
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.										.	.	.	.	.	310	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.									.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.
Query Sequence		A	G	G	E	A	F	E	A	R	F	I	E	A	M	D	D	D	F	N	T	P	E	A	Y	S	V	L	F	D	M	A	R	E	V	.	.	.	.	.	.	.	.	N	R	L	K	A	E	D	M	A	A	A	N	A	M	A	S	H	L	R	K	L	S	A	V	L	G	L	L	E	Q	E	P	E	A	F	L	Q	S
Query Conservation																																				.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	F	D	Y	Q	K	L	E	W	V	N	G	K	H	M	R	R	I	D	L	E	D	L	K	R	E	F	I	E	W	A	K	Y	A	G	K	E	I	P	S	V	D	E	R	Y	F	S	E	T	L	R	I	C	R	E	K	V	N	T	L	S	Q	L	Y	D	I	M	Y	P	F	M	N	D	D	Y	E	Y	E	K	D
Template Known Secondary structure																			S																	T																			T	T	S		S	S														S
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	Q	A	D	D	S	E	V	A	E	I	E	A	L	I	Q	Q	R	L	D	A	R	K	A	K	D	W	A	A	A	D	A	A	R	D	R	L	N	E
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		Y	V	E	K	F	L	K	R	E	E	A	E	R	V	L	E	E	A	K	K	A	F	K	D	L	N	S	W	N	.	M	E	E	I	E	K	T	L	R	D
Template Known Secondary structure						T	T	T	S	T	T														T		S			S	.
Template Predicted Secondary structure																															.
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.		.	.	.	.	.	.	.	430	.	.