Job Description P21888 Confidence 98.67% Date Thu Jan 5 11:38:38 GMT 2012 Rank 58 Aligned Residues 197 % Identity 21% Template c3a05A_ PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from2 hyperthermophilic archaeon, aeropyrum pernix k1 complex3 with tryptophan Resolution 2.20 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	G	E	V	G	M	Y	V	C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K
Query Conservation
Alig confidence										.																				.	.	.	.															.	.				.	.	.	.	.
Template Conservation										.																				.	.	.	.															.	.				.	.	.	.	.
Template Sequence		R	G	E	R	V	A	V	L	.	T	G	F	M	P	S	G	K	F	H	F	G	H	K	L	T	V	D	Q	.	.	.	.	L	I	Y	L	Q	K	N	G	F	K	V	F	V	A	.	.	I	A	D	.	.	.	.	.	A	E	A	F	A	V	R	R	I	G	R	E	E	A	V	R	I	A	V	E	E	Y	I	A
Template Known Secondary structure		T	T							.							S			B										.	.	.	.							T	T							.	.				.	.	.	.	.						T	T														T	T
Template Predicted Secondary structure										.																				.	.	.	.															.	.				.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110						.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		99	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		D	F	D	A	L	N	I	L	R	P	.	D	M	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R	V	D	V	V	D	D	K	R	N
Query Conservation												.
Alig confidence												.																								.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	M	I	A	L	G	L	D	P	K	D	T	E	F	Y	F	Q	T	N	R	G	T	P	Y	F	R	L	I	Q	L	F	S	G	K	.	.	.	.	.	.	V	T	A	A	E	M	E	A	I	Y	G	E	L	T	P	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T			T	T	T						G	G	G	S												T	T	S	.	.	.	.	.	.	S										S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.									.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.																									.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.																									.	.	.
Query Sequence		P	M	D	F	V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	W	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	.	.	.	.	.	.	.	.	I	H	G	G	G	S	D	L	M	F	P	H	H	E	N	E	I	A	Q	S	T	C	A	H	.	.	.
Query Conservation																																															.	.	.	.	.	.	.	.																									.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.											.														.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	M	A	S	L	T	Q	A	A	D	I	L	H	V	Q	L	D	E	Y	G	G	Y	R	H	V	V	V	P	V	G	A	D	Q	D	P	.	H	L	R	L	T	R	D	L	A	D	R	M	A	G	V	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													G	G	G	S	G	G	G	T											G	G	G			.												T	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template SS confidence
																														186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		D	G	Q	Y	V	N	Y	W	M	H	S	G	M	V	M	V	D	R	E	K	M	S	K	S	L	G	N	.	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R
Query Conservation																													.
Alig confidence																													.							.	.	.	.	.
Template Conservation																																				.	.	.	.	.
Template Sequence		E	L	E	R	P	A	S	T	Y	H	K	L	Q	P	G	L	D	G	R	K	M	S	S	S	R	P	D	S	T	I	F	L	T	D	.	.	.	.	.	P	P	E	V	A	R
Template Known Secondary structure															B		T	T	S	S	B			T	T	S	G	G	G	S		B	T	T		.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions