Job Description P21888 Confidence 98.30% Date Thu Jan 5 11:38:38 GMT 2012 Rank 67 Aligned Residues 295 % Identity 16% Template c2yy5C_ PDB info PDB header:ligase Chain: C: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from mycoplasma2 pneumoniae Resolution 2.55 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.					.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.
Query SS confidence																																												.	.	.	.
Query Sequence		G	M	Y	V	C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	.	.	.	.	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K	D
Query Conservation																																												.	.	.	.
Alig confidence						.													.	.	.														.									.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.													.	.	.														.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	L	T	.	G	I	Q	A	S	G	K	Q	H	L	G	N	.	.	.	Y	L	G	V	M	Q	S	L	I	E	L	Q	E	.	Q	C	Q	L	F	V	F	V	A	D	L	H	S	I	T	V	D	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	A	L	K	Q	N	N	F	D	L	V	R	T
Template Known Secondary structure						.						T	T		B				.	.	.				T	T	T	T							.		S												T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.													.	.	.														.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.														.	.	.	.	.	.	.	.	60	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	A	L	N	I	L	R	P	D	M	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R	V	D	V	V	D	D	K	R	N	P	M
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	A	V	G	L	D	P	Q	K	A	C	L	F	L	Q	S	D	L	L	E	H	S	M	M	G	Y	L	M	.	.	.	.	.	.	.	.	.	.	.	.	M	V	Q	S	N	L	G	E	L	Q	R	M	T	Q	F	K	A	K	K	A	L	N	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T			T	T	T						G	G	G		T										.	.	.	.	.	.	.	.	.	.	.	.			T	S													G	G	G						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.													.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	W	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D	L	M	F	P	H	H	E	N	E	I	A	Q	S	T	C	A	H	D	G	Q	Y	V	N	Y	W	M	H	S	G	M
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	L	L	T	Y	P	A	L	M	A	G	D	I	L	L	Y	Q	P	D	I	V	P	V	G	N	D	Q	.	K	Q	H	L	E	L	T	R	D	L	A	Q	R	I	Q	K	K	F	K	L	K	L	R	L	P	Q	F	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T															T	T			S						G	G	G	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template SS confidence
																									128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		260	.	.											.	.	.	.	.	.	.	270	.	.	.				.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.												.	.	.																							.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.												.	.	.																							.	.
Query Sequence		V	M	V	.	.	.	.	.	.	.	.	.	.	D	R	E	K	M	S	K	S	L	G	N	.	.	.	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R	Y	F	L	M	S	.	.	G	H	Y	R	S	Q	L	N	Y	S	E	E	N	L	K	Q	A	R	A	A	L	E	R	L	Y	T	A	L	R
Query Conservation					.	.	.	.	.	.	.	.	.	.												.	.	.																							.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.												.	.	.							.	.	.	.	.												.	.
Template Conservation																																			.	.	.	.	.
Template Sequence		Q	N	K	D	T	N	R	I	M	D	L	F	D	P	T	K	K	M	S	K	S	S	K	N	Q	N	G	V	I	Y	L	D	D	.	.	.	.	.	P	K	E	V	V	V	K	K	I	R	Q	A	T	T	D	S	F	N	K	I	R	F	A	S	K	T	Q	P	G	V	T	N	M	L	T	I	L	K	A	L	L	K
Template Known Secondary structure				T	T	T	T	T		B		S	S		T	T	S	B			T	T		S		G	G	G			B	T	T		.	.	.	.	.																S	S				S			T	T	T															T	T
Template Predicted Secondary structure																																			.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.						.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		325	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.														.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure								.																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	T	D	K	T	V	.	A	P	A	G	G	E	A	F	E	A	R	F	I	E	A	M	D	D	D	F	N	T	P	E	A	Y	S	V	L	F	D	M	A	R	E	V	N	R	L	K	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	D	M	A	A	A	N	A	M	A	S	H	L	R	K	L	S	A	V
Query Conservation								.																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.																										.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.
Template Sequence		E	P	V	N	Q	S	L	T	N	Q	L	G	N	D	L	E	A	Y	F	S	T	K	S	Y	L	D	L	K	N	A	L	T	.	E	A	T	V	N	L	L	V	N	I	Q	R	K	R	E	Q	I	S	R	E	Q	V	F	N	C	L	Q	A	G	K	N	Q	A	Q	A	T	A	R	T	T	L	A	L	F	Y	D	G
Template Known Secondary structure		S	G	G	G									S						T	T	S												.																T	S
Template Predicted Secondary structure																																		.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		391	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	G	L
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		338	.	340

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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