Job Description P21888 Confidence 100.00% Date Thu Jan 5 11:38:38 GMT 2012 Rank 10 Aligned Residues 373 % Identity 21% Template c2x1lC_ PDB info PDB header:ligase Chain: C: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of mycobacterium smegmatis methionyl-trna2 synthetase in complex with methionine and adenosine Resolution 2.30 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	E	V	G	M	Y	V	C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	P	F	Y	I	T	T	A	I	A	Y	P	N	G	V	P	H	I	G	H	A	Y	E	Y	I	A	T	D	A	I	A	R	F	K	R	L	D	G	Y	D	V	R	Y	L	T	G	T	D	V	H	G	Q	K	M	A	E	T	A	A	K	E	G	I	P	A	A	E	L	A	R	R	N	S	D	V	F	Q	R	L
Template Known Secondary structure												B			S	S																							T	T													S											T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		F	D	A	L	N	I	L	R	P	D	M	E	P	R	A	T	H	.	.	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R	V	D	V	V	D	D	K	R	N
Query Conservation																			.	.
Alig confidence										.									.	.																																				.	.	.
Template Conservation										.																																														.	.	.
Template Sequence		Q	E	K	L	N	I	S	F	.	D	R	F	I	R	T	S	D	A	D	H	Y	E	A	S	K	A	I	W	K	R	M	A	D	A	G	D	I	Y	L	D	A	Y	T	E	E	Q	T	Y	F	F	R	L	S	A	.	.	.	Y	T	D	R	L	L	A	L	Y	E	E	H	P	E	F	I	G	P	D	A	R	R	N
Template Known Secondary structure					T	T				.	S					T	T	S																	T	T																	G	G	G	.	.	.	S												G	G	G			S
Template Predicted Secondary structure										.																																														.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.																						.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																					.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	M	D	F	V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	.	P	W	G	A	G	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D	L	M	F	P	H	H
Query Conservation																					.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																																																																	.	.
Template Sequence		E	I	V	S	F	V	S	G	G	L	K	D	L	S	I	S	R	T	T	F	D	W	G	V	P	V	P	D	H	P	D	H	V	M	Y	V	W	V	D	A	L	T	N	Y	L	T	G	V	G	F	P	D	T	E	S	E	S	F	R	R	Y	W	P	.	.	A	D	L	H	M	I	G	K	D	I	I	R	F	H	T
Template Known Secondary structure								T	T										S	S				S				T	T														T					T	T	T	T	T		T	T	S								S	.	.		S						G	G	G
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		E	N	E	I	A	Q	S	T	C	A	H	D	G	Q	Y	V	N	Y	W	M	H	S	G	M	V	M	V	D	R	E	K	M	S	K	S	L	G	N	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R	Y	F	L	M	S	.	G	H	Y	R	S	Q	L	N	Y	S	E	E	N	L	K	Q	A	R	A
Query Conservation																																																														.
Alig confidence											.																																																			.
Template Conservation											.
Template Sequence		V	Y	W	P	A	F	L	M	S	.	A	G	L	P	L	P	K	R	I	F	A	H	G	W	L	L	N	R	G	E	K	M	S	K	S	I	G	N	V	V	D	P	V	N	L	V	D	T	F	G	L	D	Q	V	R	Y	F	L	L	R	E	V	P	F	G	Q	D	G	S	Y	N	E	D	A	I	I	G	R	V	N
Template Known Secondary structure		T									.		T					S												S		S			T	T	T			S	S																						S		T	T	S
Template Predicted Secondary structure											.
Template SS confidence
		272	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		315										.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.														.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	.	.	.	.	.	.	.	.	.	L	E	R	L	Y	T	A	L	R	G	T	D	K	T	V	A	P	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	A	F	E	A	R	F	I	E	A	M	D	D	D	F	N	T	P	E	A	Y	S	V	L	F	D	M	A	R	E	V	N	R	L	K	A	E
Query Conservation			.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation																																																								.
Template Sequence		A	D	L	A	N	E	L	G	N	L	A	Q	R	S	L	S	M	V	A	K	N	L	G	A	A	V	P	D	P	G	E	F	T	D	E	D	T	A	L	L	A	A	A	D	A	L	L	E	R	V	R	E	H	F	.	D	V	P	A	M	H	L	A	L	E	A	I	W	S	V	L	G	A	A	N	R	Y	F	S	A
Template Known Secondary structure																							S	T	T	B																				T										.	T	T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
		373	.	.	.																		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	M	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	A	M	A	S	H	L	R	K	L	S	A	V	L	G	L	L	E	Q	E	P	E	A
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	E	P	W	V	L	R	K	S	D	A	A	E	D	Q	Q	R	F	R	T	V	L	Y	T	T	L	E	V	V	R	I	A	S	L	L	L	Q	P	V	M	P	E	S	T	A
Template Known Secondary structure								T	T																												T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.