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Job DescriptionP21888
Confidence98.53%DateThu Jan 5 11:38:38 GMT 2012
Rank61Aligned Residues224
% Identity14%Templatec2rkjM_
PDB info PDB header:ligase/rnaChain: M: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: cocrystal structure of a tyrosyl-trna synthetase splicing2 factor with a group i intron rna
Resolution4.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  GEVGMYV. CGITVYDL. CHIGHGRTFVAFDVVARYLRFLGYKLKYVRNI. . TDIDDKIIKRANENGESFVAMVDRMIAEM
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Template Sequence  RRIGAYVGIDPT. . APSLHVGHLLPLMP. . . . LFWMYLEGYKAFTLIGGSTAKIGDPT. GDATMNMTKIHYQLKKLWENV
Template Known Secondary structure  S


TT..SSS
BGGG....T

TTGGGT



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   94.....100..... ....110......... 120.........130.........140..... ....150.........160......
 
   97..100.........110.........120.........130.........140.........150.........160.........170......
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Query Sequence  HKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKR
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Template Sequence  DTQMRARGYEADWARK. . . . . . . . . . . . . . . . . . . . . RGIVNNNHWW. . . . . . . . . . . . . . . . . . . . . . NKQPMLEVLRR
Template Known Secondary structure  TT



SS
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T......................TT

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   178.180.........190... ......200... ......210....
 
   177..180.........190.........200... ......210......... 220.........230.........240.........250
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Query Sequence  NPMDFVLWKMSKEGEPSWPSPWGAGRP. GWHIECSAMNCKQLGN. . . . HFDIHGGGSDLMFPHHENEIAQSTCAHDGQY.
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Template Sequence  VGHALRIGPMLSRDTVKNKMTQGDGVSFAEFTYPIMQGWDWFELFYQQGVQMQIGGSDQ. YGNIISGLEVVKAARESEPD
Template Known Secondary structure  TTTT

ST
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   215....220.........230.........240.........250.........260.........270... ......280.........290...
 
   251........260. ........270.........280.........290.......
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Query Sequence  . . . . . . . . . . . . . . VNYWMHSGMVM. VDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGH
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Template Sequence  PQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDP. . YQTSVFDFYGYFVRRS
Template Known Secondary structure  S

STT






B
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   294.....300.........310.........320.........330....... ..340.........350...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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