Job Description P21888 Confidence 100.00% Date Thu Jan 5 11:38:38 GMT 2012 Rank 38 Aligned Residues 380 % Identity 15% Template c2o5rA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase 1; PDBTitle: crystal structure of glutamyl-trna synthetase 1 (ec 6.1.1.17)2 (glutamate-trna ligase 1) (glurs 1) (tm1351) from thermotoga maritima3 at 2.5 a resolution Resolution 2.34 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K	D	F	D	A	L	N	I	L	R
Query Conservation
Alig confidence																											.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	P	S	P	T	G	F	L	H	V	G	G	A	R	T	A	L	F	N	F	L	F	A	R	.	.	.	.	.	K	E	K	G	K	F	I	L	R	I	E	D	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	R	S	E	R	E	Y	E	E	K	L	X	E	S	L	R	W	L	G	L	L	W
Template Known Secondary structure								S			B																.	.	.	.	.			T							B			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.			S	G	G	G														T
Template Predicted Secondary structure																											.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30						.	.	.	.	.	.	.	.	.	40	.	.	.	.														.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		108	.	110									.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.															.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	M	.	.	.	.	.	.	.	.	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A
Query Conservation					.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	G	P	D	V	G	G	D	H	G	P	Y	R	Q	S	E	R	V	E	I	Y	R	E	H	A	E	R	L	V	K	E	G	K	A	Y	Y	V	Y	A	Y	P	E	E	I	E	E	X	R	E	K	L	L	S	E	G	K	A	P	H	Y	S	Q	E	X	F	E	K	F	D	T	P	E	R	R	R	E	Y	E	E
Template Known Secondary structure		S	B	B	T	T	T	B		T	T				B	G	G	G	G														T	T	S								S	T	T	T										T	T					B		G	G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.									.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.				.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.																																				.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.																																				.	.	.
Query Sequence		G	A	R	V	D	V	V	D	D	K	R	N	P	M	D	F	V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	.	.	.	.	.	.	.	.	W	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D	L	M	F	.	.	.	P	H
Query Conservation																																		.	.	.	.	.	.	.	.																																				.	.	.
Alig confidence			.																															.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation			.																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		K	.	G	L	R	P	A	V	F	F	K	X	P	R	K	D	Y	V	L	N	D	V	V	K	G	E	V	V	F	K	T	G	A	I	G	D	F	V	I	X	R	S	N	G	L	P	T	Y	N	F	A	C	V	.	.	.	.	.	.	.	.	.	.	V	D	D	X	L	X	E	I	T	H	V	I	R	G	D	D	H
Template Known Secondary structure		T	.	T											S	S							T	T	T							T	T	S	S		B						T	T	S		B								.	.	.	.	.	.	.	.	.	.						T	T		S						G	G	G
Template Predicted Secondary structure			.																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		148		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.											200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		235	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.				.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.																																																						.	.	.
Query SS confidence										.	.																																																						.	.	.
Query Sequence		H	E	N	E	I	A	Q	S	.	.	T	C	A	H	D	G	Q	Y	V	N	Y	W	M	H	S	G	M	V	M	V	D	R	E	K	M	S	K	S	L	G	N	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R	Y	F	L	M	S	.	.	.	G	H	Y	R	S	Q	L	N	Y	S	E	E	N	L
Query Conservation										.	.																																																						.	.	.
Alig confidence										.	.																																																						.	.	.
Template Conservation
Template Sequence		L	S	N	T	L	R	Q	L	A	L	Y	E	A	F	E	K	A	P	P	V	F	A	H	V	S	T	I	L	G	P	D	G	K	K	L	S	K	R	H	G	A	T	S	V	E	A	F	R	D	X	G	Y	L	P	E	A	L	V	N	Y	L	A	L	L	G	W	S	H	P	E	G	K	E	L	L	T	L	E	E	L
Template Known Secondary structure															T	T															T	T	S	S	B			G	G	G	S			B								T												T	S	S	B			T	T
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	A	R	A	A	L	E	R	L	Y	T	A	L	R	G	T	D	K	T	V	A	P	A	G	G	E	A	F	E	A	R	F	I	E	A	M	D	D	D	F	N	T	P	E	A	Y	S	V	L	F	D	M	A	R	E	V	N	R	L	K	A	E	D	M	A	A	A	N	A	M	A	S	H	L	R	K	L	S	A
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.																																													.
Template Conservation							.	.	.	.	.	.	.	.	.																																													.
Template Sequence		I	S	S	F	S	.	.	.	.	.	.	.	.	.	L	D	R	L	S	P	N	P	A	I	F	D	P	Q	K	L	K	W	X	N	G	Y	Y	L	R	N	X	P	I	E	K	L	A	E	L	A	K	P	F	F	E	K	A	G	.	I	K	I	I	D	E	E	Y	F	K	K	V	L	E	I	T	K	E	R	V	E
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	G	G	G	B		S	S																				S																T	T	.																	T	T	T		S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																													.
Template SS confidence
		297	.	.	300	.										.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.				.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		V	L	G	L	L	E	Q	E	P	E	A	F	L	Q	S	G	A	Q	A	D	D	S	E	V	A	E	I	E	A	L	I	Q	Q	R	L	D	A	R	K	A	K	D	W	.	.	.	A	A	A	D	A	A	R	D	R	L	N	E	M	G	I	V
Query Conservation																																													.	.	.
Alig confidence																						.	.																						.	.	.
Template Conservation																						.	.
Template Sequence		V	L	S	E	F	P	E	E	S	R	F	F	F	E	D	P	A	P	V	E	.	.	I	P	E	E	X	K	E	V	F	S	Q	L	K	E	E	L	Q	N	V	R	W	T	X	E	E	I	T	P	V	F	K	K	V	L	K	Q	H	G	V	K
Template Known Secondary structure		S	G	G	G					S	G	G	G	T	S							.	.			G	G	G											T	T	T	S		S	S																T
Template Predicted Secondary structure																						.	.
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.			.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.