Job Description P21888 Confidence 100.00% Date Thu Jan 5 11:38:38 GMT 2012 Rank 37 Aligned Residues 388 % Identity 16% Template c2ja2A_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase; PDBTitle: mycobacterium tuberculosis glutamyl-trna synthetase Resolution 1.65 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K	D	F	D	A	L	N	I	L	R
Query Conservation
Alig confidence																												.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	C	P	S	P	T	G	T	P	H	V	G	L	V	R	T	A	L	F	N	W	A	Y	A	R	H	.	.	.	.	.	T	G	G	T	F	V	F	R	I	E	D	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	R	D	S	E	E	S	Y	L	A	L	L	D	A	L	R	W	L	G	L	D	W
Template Known Secondary structure						S	S	S	S		B																	.	.	.	.	.		T							B					.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T																	T
Template Predicted Secondary structure																												.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.						.	.	.	40	.	.	.	.	.	.	.	.	.														50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		108	.	110									.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.												.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	M	.	.	.	.	.	.	.	.	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	.	.	.	.	.	.	.	.	.	.	.	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R
Query Conservation					.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	G	P	E	V	G	G	P	Y	G	P	Y	R	Q	S	Q	R	A	E	I	Y	R	D	V	L	A	R	L	L	A	A	G	E	A	Y	H	A	F	S	T	P	E	E	V	E	A	R	H	V	A	A	G	R	N	P	K	L	G	Y	D	N	F	D	R	H	L	T	D	A	Q	R	A	A	Y	L	A	E	G	R
Template Known Secondary structure		S	B	B	T	T	T	B		T	T				B	G	G	G															T	T	S																		T	T			T	T	S					G	G	G	G												T	T
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.									.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.				.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.																																			.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.																																			.	.	.
Query Sequence		V	D	V	V	D	D	K	R	N	P	M	D	F	V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	.	.	.	.	.	.	.	.	W	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D	L	M	.	.	.	F	P	H	H	E	N
Query Conservation																															.	.	.	.	.	.	.	.																																			.	.	.
Alig confidence												.																			.	.	.	.	.	.	.	.															.	.	.																		.	.	.
Template Conservation												.																																									.	.	.
Template Sequence		Q	P	V	V	R	L	R	M	P	D	.	D	D	L	A	W	N	D	L	V	R	G	P	V	T	F	A	A	G	S	V	P	D	F	A	L	T	R	A	S	G	D	P	L	Y	T	L	V	N	P	C	.	.	.	D	D	A	L	M	K	I	T	H	V	L	R	G	E	D	L	L	P	S	T	P	R	Q	L	A	L
Template Known Secondary structure											S	.	S							T	T	T							T	T		S				B	S	B		T	T	S		B									.	.	.					T	T								G	G	G	G	G	G
Template Predicted Secondary structure												.																																									.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	A	Q	S	T	C	A	H	D	G	Q	Y	V	N	Y	W	M	H	S	G	M	V	M	V	D	R	E	K	M	S	K	S	L	G	N	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R	Y	F	L	M	S	G	H	Y	R	S	Q	L	N	Y	S	E	E	N	L	K	Q	A	R	A	A	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	Q	A	L	I	R	I	G	V	A	E	R	I	P	K	F	A	H	L	P	T	V	L	G	E	G	T	K	K	L	S	K	R	D	P	Q	S	N	L	F	A	H	R	D	R	G	F	I	P	E	G	L	L	N	Y	L	A	L	L	G	W	S	I	A	D	D	H	D	L	F	G	L	D	E	M	V	A	A	F	D
Template Known Secondary structure								T	T	S																S	S	S	S	B			T	T	S	G	G	G	B								T												T	S	S			S		S	S
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	Y	T	A	L	R	G	T	D	K	T	V	A	P	A	G	G	E	A	F	E	A	R	F	I	E	A	M	D	D	D	F	N	T	P	E	A	Y	S	V	L	F	D	M	A	R	E	V	N	R	L	K	A	E	D	M	A	A	A	N	A	M	A	S	H	L	R	K	L	S	A	V	L	G	L	L	E	Q	E
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	V	A	D	V	N	S	S	P	A	R	F	D	Q	K	K	A	D	A	L	N	A	E	H	I	R	M	L	D	V	G	D	F	T	V	R	L	R	D	H	L	D	T	H	G	H	H	I	A	L	D	E	A	A	F	A	A	A	A	E	L	V	Q	T	R	I	V	V	L	G	D	A	W	E	L
Template Known Secondary structure		.	.	.	.	.	.	G	G	G				S																				S																T	T				S	S													T	T	S		S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		398	.	400	.	.	.	.	.	.	.							.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.
Query Sequence		P	E	A	F	L	Q	S	G	A	Q	.	.	.	.	.	.	A	D	D	S	E	V	A	E	I	E	A	L	I	Q	Q	R	L	D	A	R	K	A	K	D	W	A	A	A	D	A	A	R	D	R	L	N	E
Query Conservation												.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																											.
Template Conservation																																												.
Template Sequence		L	K	F	F	N	D	D	Q	Y	V	I	D	P	K	A	A	A	K	E	L	G	P	D	G	A	A	V	L	D	A	A	L	A	A	L	T	S	V	T	D	W	T	.	A	P	L	I	E	A	A	L	K	D
Template Known Secondary structure			G	G	G	S	T	T	T												S	S																T		S	S			.
Template Predicted Secondary structure																																												.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.