Job Description P21888 Confidence 98.76% Date Thu Jan 5 11:38:38 GMT 2012 Rank 55 Aligned Residues 263 % Identity 16% Template c2j5bA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of the tyrosyl trna synthetase from acanthamoeba2 polyphaga mimivirus complexed with tyrosynol Resolution 2.20 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	E	V	G	M	Y	V	C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K	D
Query Conservation
Alig confidence										.																				.	.								.								.	.	.	.	.																				.
Template Conservation										.																				.	.								.								.	.	.	.	.																				.
Template Sequence		G	R	I	F	T	A	Y	N	.	G	F	E	P	S	G	R	I	H	I	A	Q	A	L	I	T	V	M	N	.	.	T	N	N	M	I	E	C	.	G	G	Q	M	I	I	Y	.	.	.	.	.	I	A	D	W	F	A	K	M	N	L	K	M	N	G	D	I	N	K	I	.	R	E	L	G	R	Y	F	I	E	V
Template Known Secondary structure		T								.						S	S		B											.	.							T	.	T							.	.	.	.	.									T	T	G	G	G	G						.
Template Predicted Secondary structure										.																				.	.								.								.	.	.	.	.																				.
Template SS confidence
		28	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.		.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		F	D	A	L	N	I	L	R	P	D	M	.	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R	V	D	V	V	D	D	K	R	N	P
Query Conservation													.
Alig confidence													.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	K	A	C	G	I	N	L	D	G	T	R	F	I	W	A	S	E	F	I	A	S	N	P	S	Y	I	E	R	M	L	D	I	A	E	F	S	T	I	S	R	V	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T			G	G	G																																	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		M	D	F	V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	W	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	.	.	.	G	N	H	F	D	I	H	G	G	G	S	D	L	M	F	P	H	H	E	N	E	I	A	Q	S	T	C	A	H	D	G	Q	Y	V	N	Y	W	M
Query Conservation																																									.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.																.																		.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.																		.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	F	Y	P	C	M	Q	A	A	D	V	F	E	L	V	P	E	G	I	D	I	C	Q	L	G	I	D	Q	R	K	.	V	N	M	L	A	I	E	Y	A	N	D	R	G	L	K	I	P	.	.	I	S	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														S	S	T	T			S					B	G	G	G			.												T	T					.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.																		.	.
Template SS confidence
																													159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.
		256	.	.	.	260	.		.	.	.			.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure								.				.	.										.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.				.	.										.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	S	G	M	V	M	.	V	D	R	.	.	E	K	M	S	K	S	L	G	N	.	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R	Y	F	L	M	S	G	H	Y	R	S	Q	L	N	Y	S	E	E	N	L	K	Q	A	R	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.				.	.										.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.				.	.										.							.	.	.	.	.												.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.												.
Template Sequence		S	H	H	M	L	M	S	L	S	G	P	K	K	K	M	S	K	S	D	P	Q	G	A	I	F	M	D	D	.	.	.	.	.	T	E	Q	E	V	S	E	K	I	S	R	.	A	Y	C	T	D	E	T	F	D	N	P	I	F	E	Y	I	K	Y	L	L	L	R	W	F	G	T	L	N	L	C	G	K	I	Y	T
Template Known Secondary structure			B						T	T		S	S				S	T	T		G	G	G	S		B	T	T		.	.	.	.	.												.	S				S	S	S	T	T										T						S					T	T				S
Template Predicted Secondary structure																														.	.	.	.	.												.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.						.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
			316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	L	E	R	L	Y	T	A	L	R	G	T	D	K	T	V	A	P	A	G	G	E	A	F	E	A	R	F	I	E	A	M	D	D	D	F	N	T	P	E	A	Y	S	V	L	F	D	M	A	R
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		D	I	E	S	I	Q	E	D	F	S	S	M	N	K	R	E	L	K	T	D	V	A	N	Y	I	N	T	I	I	D	L	V	R	E	H	F	K	K	P	E	L	S	E	L	L	S	N	V	K	S
Template Known Secondary structure		S									T	T	S																								T	T	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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