Job Description P21888 Confidence 98.76% Date Thu Jan 5 11:38:38 GMT 2012 Rank 54 Aligned Residues 291 % Identity 17% Template c2g36A_ PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase (ec 6.1.1.2)2 (tryptophan-trna ligase)(trprs) (tm0492) from thermotoga maritima at3 2.50 a resolution Resolution 2.50 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	G	M	Y	V	C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K	D	F	D
Query Conservation
Alig confidence								.																				.	.	.															.	.						.	.	.	.	.	.
Template Conservation								.																				.	.	.															.	.						.	.	.	.	.	.
Template Sequence		H	M	R	I	L	S	.	G	M	R	P	T	G	K	L	H	I	G	H	L	V	G	A	L	E	N	.	.	.	W	V	K	L	Q	E	E	G	N	E	C	F	Y	F	.	.	V	A	D	W	H	.	.	.	.	.	.	A	L	T	T	H	Y	D	D	V	S	K	L	K	E	Y	T	R	D	L	V	R	G	F	L
Template Known Secondary structure								.						S	S		B						T					.	.	.							T	T							.	.						.	.	.	.	.	.						T	T			T	T
Template Predicted Secondary structure								.																				.	.	.															.	.						.	.	.	.	.	.
Template SS confidence
		0	.	.	.	.	.		.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	N	I	L	R	P	D	M	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R	V	D	V	V	D	D	K	R	N	P	M	D	F
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	C	G	I	D	P	E	K	S	V	I	F	V	Q	S	G	V	K	E	H	A	E	L	A	L	L	F	.	.	.	.	.	.	.	.	.	.	.	.	S	M	I	V	S	V	S	R	L	E	R	V	P	T	Y	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T			T	T	T	S					G	G	G		T										.	.	.	.	.	.	.	.	.	.	.	.		T	T	S							T						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.													.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.
Query Sequence		V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	W	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D	L	M	F	P	H	H	E	N	E	I	A	Q	S	T	C	A	H	D	G	.	.	.	.	.	Q	Y	V	N	Y	W	M	H
Query Conservation																																																																					.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.																		.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	L	S	T	A	G	F	L	I	Y	P	V	L	Q	A	A	D	I	L	I	Y	K	A	E	G	V	P	V	G	E	D	Q	.	V	Y	H	I	E	L	T	R	E	I	A	R	R	F	N	Y	L	Y	D	E	V	F	P	E	P	E	A	I	L	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S					T											T	T	T		S						G	G	G	.																		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
																		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		257	.			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.																						.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure				.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	.	.	M	V	M	V	D	R	E	K	M	S	K	S	L	G	N	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R	Y	F	L	M	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Y	R	S	Q	L	N	Y	S	E	E	N	L	K	Q	A	R
Query Conservation				.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.																						.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.
Template Sequence		R	V	P	K	L	P	G	T	D	G	R	K	M	S	K	S	Y	G	N	I	I	N	L	E	I	.	.	.	.	.	S	E	K	E	L	E	Q	T	I	L	R	M	M	T	D	P	A	R	V	R	R	S	D	P	G	N	P	E	N	C	P	V	W	K	Y	H	Q	A	F	D	I	S	E	E	E	S	K	W	V	W
Template Known Secondary structure			S						T	T	S	S				G	G	G	T				B	T	T		.	.	.	.	.											T					T	T		S	S	T	T	S				G	G	G										T	T
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.						.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		314	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure								.	.	.
Query SS confidence								.	.	.
Query Sequence		A	A	L	E	R	L	.	.	.	Y	T	A	L	R	G	T	D	K	T	V	A	P	A	G	G	E	A	F	E	A	R	F	I	E	A	M	D	D	D	F	N	T	P	E	A	Y	S	V	L	F	D	M	A	R	E	V	N	R	L	K	A	E	D	M	A	A	A	N	A	M	A	S	H	L	R	K	L	S	A	V
Query Conservation								.	.	.
Alig confidence								.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	C	T	T	A	S	I	G	C	V	D	C	K	K	L	L	L	K	N	M	K	R	K	L	A	P	I	W	E	N	F	R	K	I	D	E	D	P	H	Y	V	D	D	V	I	M	E	G	T	K	K	A	R	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	K	T	M	E	E	V	R	R	A
Template Known Secondary structure						T	T		S																														S	T	T																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.														.	.	.	.	.	.	.	320	.	.	.
		391	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	L	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	N	L	M	F
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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