Job Description P21888 Confidence 98.88% Date Thu Jan 5 11:38:38 GMT 2012 Rank 50 Aligned Residues 298 % Identity 17% Template c2el7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from thermus2 thermophilus Resolution 2.50 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K	D	F	D	A	L	N	I	L
Query Conservation
Alig confidence																							.	.																.	.												.	.	.	.							.
Template Conservation																							.	.																.	.												.	.	.	.							.
Template Sequence		L	S	G	I	Q	P	S	G	E	I	H	I	G	N	Y	L	G	A	I	K	Q	.	.	W	V	A	I	G	E	K	L	G	R	D	A	F	F	C	.	.	I	V	D	Y	H	A	L	T	N	P	L	.	.	.	.	A	Y	D	P	S	T	.	L	A	Q	R	T	F	E	A	A	L	V	N	I	A	A	G	L	D
Template Known Secondary structure							S		S			B						T					.	.									G	G	G					.	.			G	G	G	G	G	G	S	T	T	.	.	.	.	T	S					.																T
Template Predicted Secondary structure																							.	.																.	.												.	.	.	.							.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.					.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	D	M	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R	V	D	V	V	D	D	K	R	N	P	M	D	F	V	L	W	K	M
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	E	K	V	T	L	F	V	Q	S	H	V	P	E	H	T	E	L	S	W	V	F	T	T	L	T	P	L	G	D	L	T	R	M	T	Q	F	K	D	K	A	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T	S					G	G	G	S	T												T	S							T	S							T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.								.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																													.	.	.	.	.	.	.
Query SS confidence																			.																																													.	.	.	.	.	.	.
Query Sequence		S	K	E	G	E	P	S	W	P	S	P	W	G	A	G	R	P	.	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D	L	M	F	P	H	H	E	N	E	I	A	Q	S	T	C	A	H	D	.	.	.	.	.	.	.	G	Q	Y	V	N	Y	W	M	H	S	G
Query Conservation																			.																																													.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.						.																														.															.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	Q	E	T	V	W	S	G	L	L	M	Y	P	V	L	Q	A	A	D	I	L	I	Y	K	A	D	T	V	P	V	G	E	D	Q	V	Q	.	H	I	E	L	T	R	E	I	A	R	R	F	N	H	L	F	G	E	T	F	P	E	P	Q	A	L	L	N	P	E	A	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	S	S																				T	T								G	G	G			.																	S	S											T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template SS confidence
														119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		259	260	.		.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure					.					.																																																											.	.
Query SS confidence					.					.																																																											.	.
Query Sequence		M	V	M	.	V	D	R	E	.	K	M	S	K	S	L	G	N	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R	Y	F	L	M	S	G	H	Y	R	S	Q	L	N	Y	S	E	E	N	L	K	Q	A	R	A	A	L	E	R	L	Y	T	A	L	.	.	R	G	T	D	K	T	V	A	P	A	G
Query Conservation					.					.																																																											.	.
Alig confidence					.					.															.	.	.	.	.																																								.	.
Template Conservation																									.	.	.	.	.
Template Sequence		R	V	P	G	I	D	G	K	A	K	M	S	K	S	L	G	N	T	I	G	L	L	E	.	.	.	.	.	P	E	E	S	I	W	Q	K	I	Q	H	L	P	D	D	P	T	I	L	F	T	Y	L	S	Y	F	A	P	K	D	L	V	E	A	L	K	E	E	Y	R	K	A	G	V	G	T	Y	V	V	K	R	I
Template Known Secondary structure				B		T	T	S	S	S	B			T	T	T	T				B	S	S	S	.	.	.	.	.											T																S														T	T		S
Template Predicted Secondary structure																									.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.						.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		G	E	A	F	E	A	R	F	I	E	A	M	D	D	D	F	N	T	P	E	A	Y	S	V	L	F	D	M	A	R	E	V	N	R	L	K	A	E	D	M	A	A	A	N	A	M	A	S	H	.	L	R	K	L	S	A	V	L	G	L	L
Query Conservation																																																			.
Alig confidence																		.	.	.	.	.	.																												.
Template Conservation																		.	.	.	.	.	.
Template Sequence		L	F	D	H	L	M	E	A	L	R	P	I	R	E	R	A	.	.	.	.	.	.	E	A	L	K	K	D	P	D	Y	V	M	D	A	L	L	E	G	A	K	R	A	R	A	V	A	Q	A	T	M	E	E	V	R	E	K	V	G	L	L
Template Known Secondary structure																		.	.	.	.	.	.																																				T	T
Template Predicted Secondary structure																		.	.	.	.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.							290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions