Job Description P21888 Confidence 99.17% Date Thu Jan 5 11:38:38 GMT 2012 Rank 46 Aligned Residues 205 % Identity 16% Template c2cybA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase complexed with2 l-tyrosine from archaeoglobus fulgidus Resolution 1.80 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	G	E	V	G	M	Y	V	C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K
Query Conservation
Alig confidence										.														.	.	.														.								.	.						.	.	.	.	.	.
Template Conservation										.														.	.	.														.								.	.						.	.	.	.	.	.
Template Sequence		T	K	E	K	P	R	A	Y	.	V	G	Y	E	P	S	G	E	I	H	L	G	H	.	.	.	M	M	T	V	Q	K	L	M	D	L	Q	E	A	.	G	F	E	I	I	V	L	.	.	L	A	D	I	H	.	.	.	.	.	.	A	Y	L	N	E	K	G	T	F	E	E	I	A	E	V	A	D	Y	N	K	K
Template Known Secondary structure		S		S						.							S			B				.	.	.													T	.	T							.	.						.	.	.	.	.	.				T	T
Template Predicted Secondary structure										.														.	.	.														.								.	.						.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.				50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.			70	.	.	.	.							.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	D	A	L	N	I	L	R	P	D	M	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R	V	D	V	V	D	D	K	R	N	P
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	F	I	A	L	G	L	D	E	S	R	A	K	F	V	L	G	S	E	Y	Q	L	S	R	D	Y	V	L	D	V	L	K	M	.	.	.	.	.	.	.	.	.	A	R	I	T	T	L	N	R	A	R	R	S	M	D	E	V	S	R	R	K	E	D	P	M	V	S	Q	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T			T	T	T						G	G	G	T	T	T	S											.	.	.	.	.	.	.	.	.				S									T	T	T	T		S		S	S	S			T			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.										.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	F	V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	W	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D	L	M	F	P	H	H	E	N	E	I	A	Q	S	T	C	A	H	D	G	Q	Y	V	N	Y	W	M	H	S	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	Y	P	L	M	Q	A	L	D	I	A	H	L	G	V	D	L	A	V	G	G	I	D	Q	R	.	.	K	I	H	M	L	A	R	E	N	L	P	R	L	G	Y	S	S	P	V	C	L	H	T	P	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T		S						G	G	G		.	.										G	G	G	G	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template SS confidence
																													156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	M	V	D	R	E	K	M	S	K	S	L	G	N	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R
Query Conservation
Alig confidence																							.	.	.	.	.
Template Conservation																							.	.	.	.	.
Template Sequence		L	V	G	L	D	G	Q	K	M	S	S	S	K	G	N	Y	I	S	V	R	D	.	.	.	.	.	P	P	E	E	V	E
Template Known Secondary structure			B		T	T	S	S	B			T	T	T	T		S		B	T	T		.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.						.	.	230	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions