Job Description P21888 Confidence 98.95% Date Thu Jan 5 11:38:38 GMT 2012 Rank 48 Aligned Residues 274 % Identity 15% Template c2cyaA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase from aeropyrum pernix Resolution 2.20 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	E	V	G	M	Y	V	C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K	D
Query Conservation
Alig confidence									.														.	.	.														.								.	.	.	.	.																			.
Template Conservation									.														.	.	.														.								.	.	.	.	.																			.
Template Sequence		G	A	R	I	K	G	Y	.	I	G	Y	E	P	S	G	V	A	H	I	G	W	.	.	.	L	V	W	M	Y	K	V	K	D	L	V	E	A	.	G	V	D	F	S	V	L	.	.	.	.	.	E	A	T	W	H	A	Y	I	N	D	K	L	G	G	D	M	D	L	.	I	R	A	A	A	R	I	V	R	R	V
Template Known Secondary structure			S						.							S	S		B	T			.	.	.													T	.	T							.	.	.	.	.									T	T	G	G	G	G					.
Template Predicted Secondary structure									.														.	.	.														.								.	.	.	.	.																			.
Template SS confidence
		33	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.				.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.						.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	A	L	N	I	L	R	P	D	M	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G	A	R	V	D	V	V	D	D	K	R	N	P	M
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	E	A	A	G	V	P	V	E	R	V	R	F	V	D	A	E	E	L	A	S	D	K	D	Y	W	G	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T			G	G	G											T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		D	F	V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	W	G	A	G	R	P	.	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D	L	M	F	P	H	H	E	N	E	I	A	Q	S	T	C	A	H	D	G	Q	Y	V	N	Y	W	M	H	S	G
Query Conservation																										.
Alig confidence		.																								.																														.																		.	.
Template Conservation		.																																																						.																		.	.
Template Sequence		.	I	R	V	A	K	R	A	S	L	A	R	V	R	R	A	L	A	E	E	A	E	V	D	A	S	K	L	I	Y	P	L	M	Q	V	S	D	I	F	Y	M	D	L	D	I	A	L	G	G	M	D	Q	R	K	.	A	H	M	L	A	R	D	V	A	E	K	L	G	R	K	K	P	.	.	V	A	I	H	T	P
Template Known Secondary structure		.						T	S							T	T				G	G	G	S		T																T	T		S						G	G	G			.										T	T	T	T					.	.
Template Predicted Secondary structure		.																																																						.																		.	.
Template SS confidence
			131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.
		259	260	.		.	.	.		.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.																			.	.
Predicted Secondary structure					.				.								.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.				.								.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	V	M	.	V	D	R	.	E	K	M	S	K	S	L	.	G	N	F	F	T	V	R	D	V	L	K	Y	Y	D	A	E	T	V	R	Y	F	L	M	S	G	H	Y	R	S	Q	L	N	Y	S	E	E	N	L	K	Q	A	R	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E
Query Conservation					.				.								.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.				.								.									.	.	.	.	.												.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.												.
Template Sequence		I	I	S	S	L	Q	G	P	V	K	M	S	K	S	K	P	E	T	A	V	F	V	V	D	.	.	.	.	.	S	D	D	D	I	R	R	K	I	R	K	.	A	Y	C	P	A	K	Q	V	Q	G	N	P	V	L	E	I	A	R	Y	I	L	F	A	R	D	G	F	T	L	R	V	D	V	E	Y	T	S	Y	E
Template Known Secondary structure				B		S	S				B			S	S	S	G	G	G	S		B	T	T		.	.	.	.	.											T	.	S				T	T			T	T										T	T	T	T	S	T	T										S	S
Template Predicted Secondary structure																										.	.	.	.	.												.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.						.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.			.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		R	L	Y	T	A	L	R	G	T	D	.	.	K	T	V	A	P	A	G	G	E	A	F	E	A	R	F	I	E	A	M	D	D	D	F	N	T	P	E	A	Y	S	V	L	F	D	M	A	R	E
Query Conservation												.	.
Alig confidence												.	.
Template Conservation
Template Sequence		E	L	E	R	D	Y	T	D	G	R	L	H	P	L	D	L	K	N	A	V	A	E	S	L	I	E	V	V	R	P	I	R	G	A	V	L	G	D	P	A	M	K	R	A	L	E	A	I	E	G
Template Known Secondary structure									T	T		S																										T	S
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions