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Job DescriptionP21888
Confidence100.00%DateThu Jan 5 11:38:38 GMT 2012
Rank6Aligned Residues386
% Identity21%Templatec2ct8A_
PDB info PDB header:ligase/rnaChain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of aquifex aeolicus methionyl-trna2 synthetase complexed with trna(met) and methionyl-adenylate3 anologue
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20......... 30.........40.........50.........60.........70.........80.........90......
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Query Sequence  IHAGEVGMYVCG. ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEM
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Template Sequence  MTLMKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERF
Template Known Secondary structure 

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TT


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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   97..100.........110...... ...120.........130....... ..140.........150.........160.........170.
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Query Sequence  HKDFDALNILRPDMEPRATH. . HIAEIIELTEQLIAKGHAYVA. . . DNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDV
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Template Sequence  KKLWEFLKIEY. TKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEKEPSYFFRLSKYQD. . . . . . KLLELYEKNPEFIQ
Template Known Secondary structure  TT


.STTSTTS




GGGS......SGGGB
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   81........90. ........100.........110.........120.........130......... 140.........150...
 
   172.......180.........190...... ...200... ......210.... .....220.........230.....
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Query Sequence  VDDKRNPMDFVLWKMSKEGEPSWPS. . . PWGAGRP. . . . . . . . GWHIECSAMNC. . . . . KQLGNHFDIHGGGSDLMFPHH
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Template Conservation                   
    
      

   
      
 

 
    
              

   
 
    
 
Template Sequence  PDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWPADLHLVGKDILRFHT
Template Known Secondary structure  STTT




TTT

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B
TT
TT
TTTTT

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SGGG
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   186...190.........200.........210.........220.........230.........240.........250.........260.....
 
   236...240.........250.........260.........270.........280.........290..... ....300.........310....
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Query Sequence  ENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMS. GHYRSQLNYSEENLKQARA
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Template Sequence  VYWPAFLMSL. GYELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRIN
Template Known Secondary structure  T.T



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   266...270..... ....280.........290.........300.........310.........320.........330.........340....
 
   315 ....320.........330...... ...340.........350.........360.........370.....
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Query Sequence  A. . . . . . . . . LERLYTALRGTDKTVAPAGGE. . . . . . . . AFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMA. .
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Template Conservation        
 
   
                 
  
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Template Sequence  GELANEIGNLYSRVVNMAHKFLGGEVSGARDEEYAKIAQESIKNYENYM. EKVNFYKAIEEILKFTSYLNKYVDEKQPWA
Template Known Secondary structure  TTTTTSTT




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   345....350.........360.........370.........380.........390... ......400.........410.........420...
 
   376...380.........390.........400.........410..
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Query Sequence  . . . . . . . . . . . . AANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSE
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Template Conservation               
      
  
  

 
  
   
 
   
      
Template Sequence  LNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEKEFL
Template Known Secondary structure  TTTT
TTTSTT
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   424.....430.........440.........450.........460.........470..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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